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A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach

Three-dimensional (3D) image reconstruction of tumors has been one of the most effective techniques for accurately visualizing tumor structures and treatment with high resolution, which requires a set of two-dimensional medical images such as CT slices. In this paper we propose a novel method based...

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Autores principales: Rezaei, Seyed Reza, Ahmadi, Abbas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10106883/
https://www.ncbi.nlm.nih.gov/pubmed/37362675
http://dx.doi.org/10.1007/s11042-023-15232-0
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author Rezaei, Seyed Reza
Ahmadi, Abbas
author_facet Rezaei, Seyed Reza
Ahmadi, Abbas
author_sort Rezaei, Seyed Reza
collection PubMed
description Three-dimensional (3D) image reconstruction of tumors has been one of the most effective techniques for accurately visualizing tumor structures and treatment with high resolution, which requires a set of two-dimensional medical images such as CT slices. In this paper we propose a novel method based on generative adversarial networks (GANs) for 3D lung tumor reconstruction by CT images. The proposed method consists of three stages: lung segmentation, tumor segmentation and 3D lung tumor reconstruction. Lung and tumor segmentation are performed using snake optimization and Gustafson-Kessel (GK) clustering. In the 3D reconstruction part first, features are extracted using the pre-trained VGG model from the tumors that detected in 2D CT slices. Then, a sequence of extracted features is fed into an LSTM to output compressed features. Finally, the compressed feature is used as input for GAN, where the generator is responsible for high-level reconstructing the 3D image of the lung tumor. The main novelty of this paper is the use of GAN to reconstruct a 3D lung tumor model for the first time, to the best of our knowledge. Also, we used knowledge transfer to extract features from 2D images to speed up the training process. The results obtained from the proposed model on the LUNA dataset showed better results than state of the art. According to HD and ED metrics, the proposed method has the lowest values ​​of 3.02 and 1.06, respectively, as compared to those of other methods. The experimental results show that the proposed method performs better than previous similar methods and it is useful to help practitioners in the treatment process.
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spelling pubmed-101068832023-04-18 A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach Rezaei, Seyed Reza Ahmadi, Abbas Multimed Tools Appl Article Three-dimensional (3D) image reconstruction of tumors has been one of the most effective techniques for accurately visualizing tumor structures and treatment with high resolution, which requires a set of two-dimensional medical images such as CT slices. In this paper we propose a novel method based on generative adversarial networks (GANs) for 3D lung tumor reconstruction by CT images. The proposed method consists of three stages: lung segmentation, tumor segmentation and 3D lung tumor reconstruction. Lung and tumor segmentation are performed using snake optimization and Gustafson-Kessel (GK) clustering. In the 3D reconstruction part first, features are extracted using the pre-trained VGG model from the tumors that detected in 2D CT slices. Then, a sequence of extracted features is fed into an LSTM to output compressed features. Finally, the compressed feature is used as input for GAN, where the generator is responsible for high-level reconstructing the 3D image of the lung tumor. The main novelty of this paper is the use of GAN to reconstruct a 3D lung tumor model for the first time, to the best of our knowledge. Also, we used knowledge transfer to extract features from 2D images to speed up the training process. The results obtained from the proposed model on the LUNA dataset showed better results than state of the art. According to HD and ED metrics, the proposed method has the lowest values ​​of 3.02 and 1.06, respectively, as compared to those of other methods. The experimental results show that the proposed method performs better than previous similar methods and it is useful to help practitioners in the treatment process. Springer US 2023-04-17 /pmc/articles/PMC10106883/ /pubmed/37362675 http://dx.doi.org/10.1007/s11042-023-15232-0 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Rezaei, Seyed Reza
Ahmadi, Abbas
A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach
title A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach
title_full A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach
title_fullStr A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach
title_full_unstemmed A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach
title_short A GAN-based method for 3D lung tumor reconstruction boosted by a knowledge transfer approach
title_sort gan-based method for 3d lung tumor reconstruction boosted by a knowledge transfer approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10106883/
https://www.ncbi.nlm.nih.gov/pubmed/37362675
http://dx.doi.org/10.1007/s11042-023-15232-0
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