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Facilitating deep learning through preprocessing of optical coherence tomography images
BACKGROUND: While deep learning has delivered promising results in the field of ophthalmology, the hurdle to complete a deep learning study is high. In this study, we aim to facilitate small scale model trainings by exploring the role of preprocessing to reduce computational burden and accelerate le...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10108538/ https://www.ncbi.nlm.nih.gov/pubmed/37069534 http://dx.doi.org/10.1186/s12886-023-02916-2 |
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author | Li, Anfei Winebrake, James P Kovacs, Kyle |
author_facet | Li, Anfei Winebrake, James P Kovacs, Kyle |
author_sort | Li, Anfei |
collection | PubMed |
description | BACKGROUND: While deep learning has delivered promising results in the field of ophthalmology, the hurdle to complete a deep learning study is high. In this study, we aim to facilitate small scale model trainings by exploring the role of preprocessing to reduce computational burden and accelerate learning. METHODS: A small subset of a previously published dataset containing optical coherence tomography images of choroidal neovascularization, drusen, diabetic macula edema, and normal macula was modified using Fourier transformation and bandpass filter, producing high frequency images, original images, and low frequency images. Each set of images was trained with the same model, and their performances were compared. RESULTS: Compared to that with the original image dataset, the model trained with the high frequency image dataset achieved an improved final performance and reached maximum performance much earlier (in fewer epochs). The model trained with low frequency images did not achieve a meaningful performance. CONCLUSION: Appropriate preprocessing of training images can accelerate the training process and can potentially facilitate modeling using artificial intelligence when limited by sample size or computational power. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12886-023-02916-2. |
format | Online Article Text |
id | pubmed-10108538 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-101085382023-04-18 Facilitating deep learning through preprocessing of optical coherence tomography images Li, Anfei Winebrake, James P Kovacs, Kyle BMC Ophthalmol Research BACKGROUND: While deep learning has delivered promising results in the field of ophthalmology, the hurdle to complete a deep learning study is high. In this study, we aim to facilitate small scale model trainings by exploring the role of preprocessing to reduce computational burden and accelerate learning. METHODS: A small subset of a previously published dataset containing optical coherence tomography images of choroidal neovascularization, drusen, diabetic macula edema, and normal macula was modified using Fourier transformation and bandpass filter, producing high frequency images, original images, and low frequency images. Each set of images was trained with the same model, and their performances were compared. RESULTS: Compared to that with the original image dataset, the model trained with the high frequency image dataset achieved an improved final performance and reached maximum performance much earlier (in fewer epochs). The model trained with low frequency images did not achieve a meaningful performance. CONCLUSION: Appropriate preprocessing of training images can accelerate the training process and can potentially facilitate modeling using artificial intelligence when limited by sample size or computational power. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12886-023-02916-2. BioMed Central 2023-04-17 /pmc/articles/PMC10108538/ /pubmed/37069534 http://dx.doi.org/10.1186/s12886-023-02916-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Li, Anfei Winebrake, James P Kovacs, Kyle Facilitating deep learning through preprocessing of optical coherence tomography images |
title | Facilitating deep learning through preprocessing of optical coherence tomography images |
title_full | Facilitating deep learning through preprocessing of optical coherence tomography images |
title_fullStr | Facilitating deep learning through preprocessing of optical coherence tomography images |
title_full_unstemmed | Facilitating deep learning through preprocessing of optical coherence tomography images |
title_short | Facilitating deep learning through preprocessing of optical coherence tomography images |
title_sort | facilitating deep learning through preprocessing of optical coherence tomography images |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10108538/ https://www.ncbi.nlm.nih.gov/pubmed/37069534 http://dx.doi.org/10.1186/s12886-023-02916-2 |
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