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Facilitating deep learning through preprocessing of optical coherence tomography images

BACKGROUND: While deep learning has delivered promising results in the field of ophthalmology, the hurdle to complete a deep learning study is high. In this study, we aim to facilitate small scale model trainings by exploring the role of preprocessing to reduce computational burden and accelerate le...

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Autores principales: Li, Anfei, Winebrake, James P, Kovacs, Kyle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10108538/
https://www.ncbi.nlm.nih.gov/pubmed/37069534
http://dx.doi.org/10.1186/s12886-023-02916-2
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author Li, Anfei
Winebrake, James P
Kovacs, Kyle
author_facet Li, Anfei
Winebrake, James P
Kovacs, Kyle
author_sort Li, Anfei
collection PubMed
description BACKGROUND: While deep learning has delivered promising results in the field of ophthalmology, the hurdle to complete a deep learning study is high. In this study, we aim to facilitate small scale model trainings by exploring the role of preprocessing to reduce computational burden and accelerate learning. METHODS: A small subset of a previously published dataset containing optical coherence tomography images of choroidal neovascularization, drusen, diabetic macula edema, and normal macula was modified using Fourier transformation and bandpass filter, producing high frequency images, original images, and low frequency images. Each set of images was trained with the same model, and their performances were compared. RESULTS: Compared to that with the original image dataset, the model trained with the high frequency image dataset achieved an improved final performance and reached maximum performance much earlier (in fewer epochs). The model trained with low frequency images did not achieve a meaningful performance. CONCLUSION: Appropriate preprocessing of training images can accelerate the training process and can potentially facilitate modeling using artificial intelligence when limited by sample size or computational power. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12886-023-02916-2.
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spelling pubmed-101085382023-04-18 Facilitating deep learning through preprocessing of optical coherence tomography images Li, Anfei Winebrake, James P Kovacs, Kyle BMC Ophthalmol Research BACKGROUND: While deep learning has delivered promising results in the field of ophthalmology, the hurdle to complete a deep learning study is high. In this study, we aim to facilitate small scale model trainings by exploring the role of preprocessing to reduce computational burden and accelerate learning. METHODS: A small subset of a previously published dataset containing optical coherence tomography images of choroidal neovascularization, drusen, diabetic macula edema, and normal macula was modified using Fourier transformation and bandpass filter, producing high frequency images, original images, and low frequency images. Each set of images was trained with the same model, and their performances were compared. RESULTS: Compared to that with the original image dataset, the model trained with the high frequency image dataset achieved an improved final performance and reached maximum performance much earlier (in fewer epochs). The model trained with low frequency images did not achieve a meaningful performance. CONCLUSION: Appropriate preprocessing of training images can accelerate the training process and can potentially facilitate modeling using artificial intelligence when limited by sample size or computational power. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12886-023-02916-2. BioMed Central 2023-04-17 /pmc/articles/PMC10108538/ /pubmed/37069534 http://dx.doi.org/10.1186/s12886-023-02916-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Li, Anfei
Winebrake, James P
Kovacs, Kyle
Facilitating deep learning through preprocessing of optical coherence tomography images
title Facilitating deep learning through preprocessing of optical coherence tomography images
title_full Facilitating deep learning through preprocessing of optical coherence tomography images
title_fullStr Facilitating deep learning through preprocessing of optical coherence tomography images
title_full_unstemmed Facilitating deep learning through preprocessing of optical coherence tomography images
title_short Facilitating deep learning through preprocessing of optical coherence tomography images
title_sort facilitating deep learning through preprocessing of optical coherence tomography images
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10108538/
https://www.ncbi.nlm.nih.gov/pubmed/37069534
http://dx.doi.org/10.1186/s12886-023-02916-2
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