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CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images

We present a novel algorithm that is able to generate deep synthetic COVID-19 pneumonia CT scan slices using a very small sample of positive training images in tandem with a larger number of normal images. This generative algorithm produces images of sufficient accuracy to enable a DNN classifier to...

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Autores principales: Menon, Sumeet, Mangalagiri, Jayalakshmi, Galita, Josh, Morris, Michael, Saboury, Babak, Yesha, Yaacov, Yesha, Yelena, Nguyen, Phuong, Gangopadhyay, Aryya, Chapman, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10109233/
https://www.ncbi.nlm.nih.gov/pubmed/37069451
http://dx.doi.org/10.1007/s10278-023-00811-2
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author Menon, Sumeet
Mangalagiri, Jayalakshmi
Galita, Josh
Morris, Michael
Saboury, Babak
Yesha, Yaacov
Yesha, Yelena
Nguyen, Phuong
Gangopadhyay, Aryya
Chapman, David
author_facet Menon, Sumeet
Mangalagiri, Jayalakshmi
Galita, Josh
Morris, Michael
Saboury, Babak
Yesha, Yaacov
Yesha, Yelena
Nguyen, Phuong
Gangopadhyay, Aryya
Chapman, David
author_sort Menon, Sumeet
collection PubMed
description We present a novel algorithm that is able to generate deep synthetic COVID-19 pneumonia CT scan slices using a very small sample of positive training images in tandem with a larger number of normal images. This generative algorithm produces images of sufficient accuracy to enable a DNN classifier to achieve high classification accuracy using as few as 10 positive training slices (from 10 positive cases), which to the best of our knowledge is one order of magnitude fewer than the next closest published work at the time of writing. Deep learning with extremely small positive training volumes is a very difficult problem and has been an important topic during the COVID-19 pandemic, because for quite some time it was difficult to obtain large volumes of COVID-19-positive images for training. Algorithms that can learn to screen for diseases using few examples are an important area of research. Furthermore, algorithms to produce deep synthetic images with smaller data volumes have the added benefit of reducing the barriers of data sharing between healthcare institutions. We present the cycle-consistent segmentation-generative adversarial network (CCS-GAN). CCS-GAN combines style transfer with pulmonary segmentation and relevant transfer learning from negative images in order to create a larger volume of synthetic positive images for the purposes of improving diagnostic classification performance. The performance of a VGG-19 classifier plus CCS-GAN was trained using a small sample of positive image slices ranging from at most 50 down to as few as 10 COVID-19-positive CT scan images. CCS-GAN achieves high accuracy with few positive images and thereby greatly reduces the barrier of acquiring large training volumes in order to train a diagnostic classifier for COVID-19.
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spelling pubmed-101092332023-04-18 CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images Menon, Sumeet Mangalagiri, Jayalakshmi Galita, Josh Morris, Michael Saboury, Babak Yesha, Yaacov Yesha, Yelena Nguyen, Phuong Gangopadhyay, Aryya Chapman, David J Digit Imaging Article We present a novel algorithm that is able to generate deep synthetic COVID-19 pneumonia CT scan slices using a very small sample of positive training images in tandem with a larger number of normal images. This generative algorithm produces images of sufficient accuracy to enable a DNN classifier to achieve high classification accuracy using as few as 10 positive training slices (from 10 positive cases), which to the best of our knowledge is one order of magnitude fewer than the next closest published work at the time of writing. Deep learning with extremely small positive training volumes is a very difficult problem and has been an important topic during the COVID-19 pandemic, because for quite some time it was difficult to obtain large volumes of COVID-19-positive images for training. Algorithms that can learn to screen for diseases using few examples are an important area of research. Furthermore, algorithms to produce deep synthetic images with smaller data volumes have the added benefit of reducing the barriers of data sharing between healthcare institutions. We present the cycle-consistent segmentation-generative adversarial network (CCS-GAN). CCS-GAN combines style transfer with pulmonary segmentation and relevant transfer learning from negative images in order to create a larger volume of synthetic positive images for the purposes of improving diagnostic classification performance. The performance of a VGG-19 classifier plus CCS-GAN was trained using a small sample of positive image slices ranging from at most 50 down to as few as 10 COVID-19-positive CT scan images. CCS-GAN achieves high accuracy with few positive images and thereby greatly reduces the barrier of acquiring large training volumes in order to train a diagnostic classifier for COVID-19. Springer International Publishing 2023-04-17 2023-08 /pmc/articles/PMC10109233/ /pubmed/37069451 http://dx.doi.org/10.1007/s10278-023-00811-2 Text en © The Author(s) under exclusive licence to Society for Imaging Informatics in Medicine 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
spellingShingle Article
Menon, Sumeet
Mangalagiri, Jayalakshmi
Galita, Josh
Morris, Michael
Saboury, Babak
Yesha, Yaacov
Yesha, Yelena
Nguyen, Phuong
Gangopadhyay, Aryya
Chapman, David
CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images
title CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images
title_full CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images
title_fullStr CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images
title_full_unstemmed CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images
title_short CCS-GAN: COVID-19 CT Scan Generation and Classification with Very Few Positive Training Images
title_sort ccs-gan: covid-19 ct scan generation and classification with very few positive training images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10109233/
https://www.ncbi.nlm.nih.gov/pubmed/37069451
http://dx.doi.org/10.1007/s10278-023-00811-2
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