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A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation

Lesion segmentation is critical for clinicians to accurately stage the disease and determine treatment strategy. Deep learning based automatic segmentation can improve both the segmentation efficiency and accuracy. However, training a robust deep learning segmentation model requires sufficient train...

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Detalles Bibliográficos
Autores principales: Liu, Yingao, Yang, Fei, Yang, Yidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10113707/
https://www.ncbi.nlm.nih.gov/pubmed/36800255
http://dx.doi.org/10.1002/acm2.13927
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author Liu, Yingao
Yang, Fei
Yang, Yidong
author_facet Liu, Yingao
Yang, Fei
Yang, Yidong
author_sort Liu, Yingao
collection PubMed
description Lesion segmentation is critical for clinicians to accurately stage the disease and determine treatment strategy. Deep learning based automatic segmentation can improve both the segmentation efficiency and accuracy. However, training a robust deep learning segmentation model requires sufficient training examples with sufficient diversity in lesion location and lesion size. This study is to develop a deep learning framework for generation of synthetic lesions with various locations and sizes that can be included in the training dataset to enhance the lesion segmentation performance. The lesion synthesis network is a modified generative adversarial network (GAN). Specifically, we innovated a partial convolution strategy to construct a U‐Net‐like generator. The discriminator is designed using Wasserstein GAN with gradient penalty and spectral normalization. A mask generation method based on principal component analysis (PCA) was developed to model various lesion shapes. The generated masks are then converted into liver lesions through a lesion synthesis network. The lesion synthesis framework was evaluated for lesion textures, and the synthetic lesions were used to train a lesion segmentation network to further validate the effectiveness of the lesion synthesis framework. All the networks are trained and tested on the LITS public dataset. Our experiments demonstrate that the synthetic lesions generated by our approach have very similar distributions for the two parameters, GLCM‐energy and GLCM‐correlation. Including the synthetic lesions in the segmentation network improved the segmentation dice performance from 67.3% to 71.4%. Meanwhile, the precision and sensitivity for lesion segmentation were improved from 74.6% to 76.0% and 66.1% to 70.9%, respectively. The proposed lesion synthesis approach outperforms the other two existing approaches. Including the synthetic lesion data into the training dataset significantly improves the segmentation performance.
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spelling pubmed-101137072023-04-20 A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation Liu, Yingao Yang, Fei Yang, Yidong J Appl Clin Med Phys Medical Imaging Lesion segmentation is critical for clinicians to accurately stage the disease and determine treatment strategy. Deep learning based automatic segmentation can improve both the segmentation efficiency and accuracy. However, training a robust deep learning segmentation model requires sufficient training examples with sufficient diversity in lesion location and lesion size. This study is to develop a deep learning framework for generation of synthetic lesions with various locations and sizes that can be included in the training dataset to enhance the lesion segmentation performance. The lesion synthesis network is a modified generative adversarial network (GAN). Specifically, we innovated a partial convolution strategy to construct a U‐Net‐like generator. The discriminator is designed using Wasserstein GAN with gradient penalty and spectral normalization. A mask generation method based on principal component analysis (PCA) was developed to model various lesion shapes. The generated masks are then converted into liver lesions through a lesion synthesis network. The lesion synthesis framework was evaluated for lesion textures, and the synthetic lesions were used to train a lesion segmentation network to further validate the effectiveness of the lesion synthesis framework. All the networks are trained and tested on the LITS public dataset. Our experiments demonstrate that the synthetic lesions generated by our approach have very similar distributions for the two parameters, GLCM‐energy and GLCM‐correlation. Including the synthetic lesions in the segmentation network improved the segmentation dice performance from 67.3% to 71.4%. Meanwhile, the precision and sensitivity for lesion segmentation were improved from 74.6% to 76.0% and 66.1% to 70.9%, respectively. The proposed lesion synthesis approach outperforms the other two existing approaches. Including the synthetic lesion data into the training dataset significantly improves the segmentation performance. John Wiley and Sons Inc. 2023-02-17 /pmc/articles/PMC10113707/ /pubmed/36800255 http://dx.doi.org/10.1002/acm2.13927 Text en © 2023 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Medical Imaging
Liu, Yingao
Yang, Fei
Yang, Yidong
A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
title A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
title_full A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
title_fullStr A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
title_full_unstemmed A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
title_short A partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
title_sort partial convolution generative adversarial network for lesion synthesis and enhanced liver tumor segmentation
topic Medical Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10113707/
https://www.ncbi.nlm.nih.gov/pubmed/36800255
http://dx.doi.org/10.1002/acm2.13927
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