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Computational capability of ecological dynamics

Ecological dynamics is driven by complex ecological networks. Computational capabilities of artificial networks have been exploited for machine learning purposes, yet whether an ecological network possesses a computational capability and whether/how we can use it remain unclear. Here, we developed t...

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Detalles Bibliográficos
Autores principales: Ushio, Masayuki, Watanabe, Kazufumi, Fukuda, Yasuhiro, Tokudome, Yuji, Nakajima, Kohei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10113807/
https://www.ncbi.nlm.nih.gov/pubmed/37090968
http://dx.doi.org/10.1098/rsos.221614
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author Ushio, Masayuki
Watanabe, Kazufumi
Fukuda, Yasuhiro
Tokudome, Yuji
Nakajima, Kohei
author_facet Ushio, Masayuki
Watanabe, Kazufumi
Fukuda, Yasuhiro
Tokudome, Yuji
Nakajima, Kohei
author_sort Ushio, Masayuki
collection PubMed
description Ecological dynamics is driven by complex ecological networks. Computational capabilities of artificial networks have been exploited for machine learning purposes, yet whether an ecological network possesses a computational capability and whether/how we can use it remain unclear. Here, we developed two new computational/empirical frameworks based on reservoir computing and show that ecological dynamics can be used as a computational resource. In silico ecological reservoir computing (ERC) reconstructs ecological dynamics from empirical time series and uses simulated system responses for information processing, which can predict near future of chaotic dynamics and emulate nonlinear dynamics. The real-time ERC uses real population dynamics of a unicellular organism, Tetrahymena thermophila. The temperature of the medium is an input signal and population dynamics is used as a computational resource. Intriguingly, the real-time ecological reservoir has necessary conditions for computing (e.g. synchronized dynamics in response to the same input sequences) and can make near-future predictions of empirical time series, showing the first empirical evidence that population-level phenomenon is capable of real-time computations. Our finding that ecological dynamics possess computational capability poses new research questions for computational science and ecology: how can we efficiently use it and how is it actually used, evolved and maintained in an ecosystem?
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spelling pubmed-101138072023-04-20 Computational capability of ecological dynamics Ushio, Masayuki Watanabe, Kazufumi Fukuda, Yasuhiro Tokudome, Yuji Nakajima, Kohei R Soc Open Sci Ecology, Conservation and Global Change Biology Ecological dynamics is driven by complex ecological networks. Computational capabilities of artificial networks have been exploited for machine learning purposes, yet whether an ecological network possesses a computational capability and whether/how we can use it remain unclear. Here, we developed two new computational/empirical frameworks based on reservoir computing and show that ecological dynamics can be used as a computational resource. In silico ecological reservoir computing (ERC) reconstructs ecological dynamics from empirical time series and uses simulated system responses for information processing, which can predict near future of chaotic dynamics and emulate nonlinear dynamics. The real-time ERC uses real population dynamics of a unicellular organism, Tetrahymena thermophila. The temperature of the medium is an input signal and population dynamics is used as a computational resource. Intriguingly, the real-time ecological reservoir has necessary conditions for computing (e.g. synchronized dynamics in response to the same input sequences) and can make near-future predictions of empirical time series, showing the first empirical evidence that population-level phenomenon is capable of real-time computations. Our finding that ecological dynamics possess computational capability poses new research questions for computational science and ecology: how can we efficiently use it and how is it actually used, evolved and maintained in an ecosystem? The Royal Society 2023-04-19 /pmc/articles/PMC10113807/ /pubmed/37090968 http://dx.doi.org/10.1098/rsos.221614 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Ecology, Conservation and Global Change Biology
Ushio, Masayuki
Watanabe, Kazufumi
Fukuda, Yasuhiro
Tokudome, Yuji
Nakajima, Kohei
Computational capability of ecological dynamics
title Computational capability of ecological dynamics
title_full Computational capability of ecological dynamics
title_fullStr Computational capability of ecological dynamics
title_full_unstemmed Computational capability of ecological dynamics
title_short Computational capability of ecological dynamics
title_sort computational capability of ecological dynamics
topic Ecology, Conservation and Global Change Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10113807/
https://www.ncbi.nlm.nih.gov/pubmed/37090968
http://dx.doi.org/10.1098/rsos.221614
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