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Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak

Compartmental models are commonly used in practice to investigate the dynamical response of infectious diseases such as the COVID-19 outbreak. Such models generally assume exponentially distributed latency and infectiousness periods. However, the exponential distribution assumption fails when the so...

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Autores principales: Tunc, Huseyin, Sari, Murat, Kotil, Seyfullah Enes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10115393/
https://www.ncbi.nlm.nih.gov/pubmed/37168840
http://dx.doi.org/10.1007/s11071-023-08400-2
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author Tunc, Huseyin
Sari, Murat
Kotil, Seyfullah Enes
author_facet Tunc, Huseyin
Sari, Murat
Kotil, Seyfullah Enes
author_sort Tunc, Huseyin
collection PubMed
description Compartmental models are commonly used in practice to investigate the dynamical response of infectious diseases such as the COVID-19 outbreak. Such models generally assume exponentially distributed latency and infectiousness periods. However, the exponential distribution assumption fails when the sojourn times are expected to distribute around their means. This study aims to derive a novel S (Susceptible)-E (Exposed)-P (Presymptomatic)-A (Asymptomatic)-D (Symptomatic)-C (Reported) model with arbitrarily distributed latency, presymptomatic infectiousness, asymptomatic infectiousness, and symptomatic infectiousness periods. The SEPADC model is represented by nonlinear Volterra integral equations that generalize ordinary differential equation-based models. Our primary aim is the derivation of a general relation between intrinsic growth rate r and basic reproduction number [Formula: see text] with the help of the well-known Lotka–Euler equation. The resulting [Formula: see text] equation includes separate roles of various stages of the infection and their sojourn time distributions. We show that [Formula: see text] estimates are considerably affected by the choice of the sojourn time distributions for relatively higher values of r. The well-known exponential distribution assumption has led to the underestimation of [Formula: see text] values for most of the countries. Exponential and delta-distributed sojourn times have been shown to yield lower and upper bounds of the [Formula: see text] values depending on the r values. In quantitative experiments, [Formula: see text] values of 152 countries around the world were estimated through our novel formulae utilizing the parameter values and sojourn time distributions of the COVID-19 pandemic. The global convergence, [Formula: see text] , has been estimated through our novel formulation. Additionally, we have shown that increasing the shape parameter of the Erlang distributed sojourn times increases the skewness of the epidemic curves in entire dynamics.
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spelling pubmed-101153932023-04-20 Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak Tunc, Huseyin Sari, Murat Kotil, Seyfullah Enes Nonlinear Dyn Original Paper Compartmental models are commonly used in practice to investigate the dynamical response of infectious diseases such as the COVID-19 outbreak. Such models generally assume exponentially distributed latency and infectiousness periods. However, the exponential distribution assumption fails when the sojourn times are expected to distribute around their means. This study aims to derive a novel S (Susceptible)-E (Exposed)-P (Presymptomatic)-A (Asymptomatic)-D (Symptomatic)-C (Reported) model with arbitrarily distributed latency, presymptomatic infectiousness, asymptomatic infectiousness, and symptomatic infectiousness periods. The SEPADC model is represented by nonlinear Volterra integral equations that generalize ordinary differential equation-based models. Our primary aim is the derivation of a general relation between intrinsic growth rate r and basic reproduction number [Formula: see text] with the help of the well-known Lotka–Euler equation. The resulting [Formula: see text] equation includes separate roles of various stages of the infection and their sojourn time distributions. We show that [Formula: see text] estimates are considerably affected by the choice of the sojourn time distributions for relatively higher values of r. The well-known exponential distribution assumption has led to the underestimation of [Formula: see text] values for most of the countries. Exponential and delta-distributed sojourn times have been shown to yield lower and upper bounds of the [Formula: see text] values depending on the r values. In quantitative experiments, [Formula: see text] values of 152 countries around the world were estimated through our novel formulae utilizing the parameter values and sojourn time distributions of the COVID-19 pandemic. The global convergence, [Formula: see text] , has been estimated through our novel formulation. Additionally, we have shown that increasing the shape parameter of the Erlang distributed sojourn times increases the skewness of the epidemic curves in entire dynamics. Springer Netherlands 2023-04-19 2023 /pmc/articles/PMC10115393/ /pubmed/37168840 http://dx.doi.org/10.1007/s11071-023-08400-2 Text en © The Author(s), under exclusive licence to Springer Nature B.V. 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Paper
Tunc, Huseyin
Sari, Murat
Kotil, Seyfullah Enes
Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak
title Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak
title_full Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak
title_fullStr Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak
title_full_unstemmed Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak
title_short Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak
title_sort effect of sojourn time distributions on the early dynamics of covid-19 outbreak
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10115393/
https://www.ncbi.nlm.nih.gov/pubmed/37168840
http://dx.doi.org/10.1007/s11071-023-08400-2
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