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Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis
Introduction: In the development of atherosclerosis, the remodeling of blood vessels is a key process involving plaque formation and rupture. So far, most reports mainly believe that macrophages, smooth muscle cells, and endothelial cells located at the intima and media of artery play the key role i...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10117136/ https://www.ncbi.nlm.nih.gov/pubmed/37089432 http://dx.doi.org/10.3389/fphys.2023.1118239 |
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author | Shao, Xiuli Hou, Xiuyang Zhang, Xiaolin Zhang, Ruijia Zhu, Rongli Qi, He Zheng, Jianling Guo, Xiaoling Feng, Rui |
author_facet | Shao, Xiuli Hou, Xiuyang Zhang, Xiaolin Zhang, Ruijia Zhu, Rongli Qi, He Zheng, Jianling Guo, Xiaoling Feng, Rui |
author_sort | Shao, Xiuli |
collection | PubMed |
description | Introduction: In the development of atherosclerosis, the remodeling of blood vessels is a key process involving plaque formation and rupture. So far, most reports mainly believe that macrophages, smooth muscle cells, and endothelial cells located at the intima and media of artery play the key role in this process. Few studies had focused on whether fibroblasts located at adventitia are involved in regulating disease process. Methods and results: In this study, we conducted in-depth analysis of single-cell RNA-seq data of the total of 18 samples from healthy and atherosclerotic arteries. This study combines several analysis methods including transcription regulator network, cell-cell communication network, pseudotime trajectory, gene set enrichment analysis, and differential expression analysis. We found that SERPINF1 is highly expressed in fibroblasts and is involved in the regulation of various signaling pathways. Conclusion: Our research reveals a potential mechanism of atherosclerosis, SERPINF1 regulates the formation and rupture of plaques through the Jak-STAT signaling pathway, which may provide new insights into the pathological study of disease. Moreover, we suggest that SRGN and IGKC as potential biomarkers for unstable arterial plaques. |
format | Online Article Text |
id | pubmed-10117136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101171362023-04-21 Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis Shao, Xiuli Hou, Xiuyang Zhang, Xiaolin Zhang, Ruijia Zhu, Rongli Qi, He Zheng, Jianling Guo, Xiaoling Feng, Rui Front Physiol Physiology Introduction: In the development of atherosclerosis, the remodeling of blood vessels is a key process involving plaque formation and rupture. So far, most reports mainly believe that macrophages, smooth muscle cells, and endothelial cells located at the intima and media of artery play the key role in this process. Few studies had focused on whether fibroblasts located at adventitia are involved in regulating disease process. Methods and results: In this study, we conducted in-depth analysis of single-cell RNA-seq data of the total of 18 samples from healthy and atherosclerotic arteries. This study combines several analysis methods including transcription regulator network, cell-cell communication network, pseudotime trajectory, gene set enrichment analysis, and differential expression analysis. We found that SERPINF1 is highly expressed in fibroblasts and is involved in the regulation of various signaling pathways. Conclusion: Our research reveals a potential mechanism of atherosclerosis, SERPINF1 regulates the formation and rupture of plaques through the Jak-STAT signaling pathway, which may provide new insights into the pathological study of disease. Moreover, we suggest that SRGN and IGKC as potential biomarkers for unstable arterial plaques. Frontiers Media S.A. 2023-03-30 /pmc/articles/PMC10117136/ /pubmed/37089432 http://dx.doi.org/10.3389/fphys.2023.1118239 Text en Copyright © 2023 Shao, Hou, Zhang, Zhang, Zhu, Qi, Zheng, Guo and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Shao, Xiuli Hou, Xiuyang Zhang, Xiaolin Zhang, Ruijia Zhu, Rongli Qi, He Zheng, Jianling Guo, Xiaoling Feng, Rui Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
title | Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
title_full | Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
title_fullStr | Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
title_full_unstemmed | Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
title_short | Integrated single-cell RNA-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
title_sort | integrated single-cell rna-seq analysis reveals the vital cell types and dynamic development signature of atherosclerosis |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10117136/ https://www.ncbi.nlm.nih.gov/pubmed/37089432 http://dx.doi.org/10.3389/fphys.2023.1118239 |
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