CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database

Scientific literature is published at a rate that makes manual data extraction a highly time-consuming task. The Comprehensive Antibiotic Resistance Database (CARD) utilizes literature to curate information on antimicrobial resistance genes and to enable time-efficient triage of publications we have...

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Detalles Bibliográficos
Autores principales: Edalatmand, Arman, McArthur, Andrew G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10118295/
https://www.ncbi.nlm.nih.gov/pubmed/37079891
http://dx.doi.org/10.1093/database/baad023
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author Edalatmand, Arman
McArthur, Andrew G
author_facet Edalatmand, Arman
McArthur, Andrew G
author_sort Edalatmand, Arman
collection PubMed
description Scientific literature is published at a rate that makes manual data extraction a highly time-consuming task. The Comprehensive Antibiotic Resistance Database (CARD) utilizes literature to curate information on antimicrobial resistance genes and to enable time-efficient triage of publications we have developed a classification algorithm for identifying publications describing first reports of new resistance genes. Trained on publications contained in the CARD, CARD*Shark downloads, processes and identifies publications recently added to PubMed that should be reviewed by biocurators. With CARD*Shark, we can minimize the monthly scope of articles a biocurator reviews from hundreds of articles to a few dozen, drastically improving the speed of curation while ensuring no relevant publications are overlooked. Database URL  http://card.mcmaster.ca
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spelling pubmed-101182952023-04-21 CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database Edalatmand, Arman McArthur, Andrew G Database (Oxford) Original Article Scientific literature is published at a rate that makes manual data extraction a highly time-consuming task. The Comprehensive Antibiotic Resistance Database (CARD) utilizes literature to curate information on antimicrobial resistance genes and to enable time-efficient triage of publications we have developed a classification algorithm for identifying publications describing first reports of new resistance genes. Trained on publications contained in the CARD, CARD*Shark downloads, processes and identifies publications recently added to PubMed that should be reviewed by biocurators. With CARD*Shark, we can minimize the monthly scope of articles a biocurator reviews from hundreds of articles to a few dozen, drastically improving the speed of curation while ensuring no relevant publications are overlooked. Database URL  http://card.mcmaster.ca Oxford University Press 2023-04-20 /pmc/articles/PMC10118295/ /pubmed/37079891 http://dx.doi.org/10.1093/database/baad023 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Edalatmand, Arman
McArthur, Andrew G
CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
title CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
title_full CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
title_fullStr CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
title_full_unstemmed CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
title_short CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database
title_sort card*shark: automated prioritization of literature curation for the comprehensive antibiotic resistance database
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10118295/
https://www.ncbi.nlm.nih.gov/pubmed/37079891
http://dx.doi.org/10.1093/database/baad023
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