Cargando…

Alignment of spatial transcriptomics data using diffeomorphic metric mapping

Spatial transcriptomics (ST) technologies enable high throughput gene expression characterization within thin tissue sections. However, comparing spatial observations across sections, samples, and technologies remains challenging. To address this challenge, we developed STalign to align ST datasets...

Descripción completa

Detalles Bibliográficos
Autores principales:	Clifton, Kalen, Anant, Manjari, Aihara, Gohta, Atta, Lyla, Aimiuwu, Osagie K., Kebschull, Justus M., Miller, Michael I., Tward, Daniel, Fan, Jean
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10120659/ https://www.ncbi.nlm.nih.gov/pubmed/37090640 http://dx.doi.org/10.1101/2023.04.11.534630

Ejemplares similares

Gene count normalization in single-cell imaging-based spatially resolved transcriptomics
por: Atta, Lyla, et al.
Publicado: (2023)

Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes
por: Tward, Daniel J., et al.
Publicado: (2013)

Corrigendum to “Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes”
por: Tward, Daniel J., et al.
Publicado: (2021)

Diffeomorphism with some Sobolev metric, geodesic flow and integrable systems
por: Guha, P
Publicado: (1998)

Computational challenges and opportunities in spatially resolved transcriptomic data analysis
por: Atta, Lyla, et al.
Publicado: (2021)

Shapes and diffeomorphisms
por: Younes, Laurent
Publicado: (2019)

Shapes and Diffeomorphisms
por: Younes, Laurent
Publicado: (2010)

Large Deformation Diffeomorphic Metric Mapping Registration of Reconstructed 3D Histological Section Images and in vivo MR Images
por: Ceritoglu, Can, et al.
Publicado: (2010)

Detection of Time-Varying Structures by Large Deformation Diffeomorphic Metric Mapping to Aid Reading of High-Resolution CT Images of the Lung
por: Sakamoto, Ryo, et al.
Publicado: (2014)

Canonical General Relativity: the Diffeomorphism constraints and Spatial Frame Transformations
por: Clayton, M.A.
Publicado: (1997)

Groups of Circle Diffeomorphisms
por: Navas, Andrés, et al.
Publicado: (2011)

Germs of diffeomorphisms in the plane
por: Dumortier, Freddy, et al.
Publicado: (1981)

Evaluation of GMI and PMI diffeomorphic‐based demons algorithms for aligning PET and CT Images
por: Yang, Juan, et al.
Publicado: (2015)

Accurate and Robust Alignment of Differently Stained Histologic Images Based on Greedy Diffeomorphic Registration
por: Venet, Ludovic, et al.
Publicado: (2021)

Diffeomorphic Registration With Intensity Transformation and Missing Data: Application to 3D Digital Pathology of Alzheimer's Disease
por: Tward, Daniel, et al.
Publicado: (2020)

Diffeomorphisms and noncommutative analytic torsion
por: Lott, John
Publicado: (1999)

The structure of classical diffeomorphism groups
por: Banyaga, Augustin
Publicado: (1997)

The geometry of the group of symplectic diffeomorphisms
por: Polterovich, Leonid
Publicado: (2001)

Fine structures of hyperbolic diffeomorphisms
por: Pinto, A A, et al.
Publicado: (2008)

Bordism of diffeomorphisms and related topics
por: Kreck, Matthias
Publicado: (1984)

Diffeomorphisms of elliptic 3-manifolds
por: Hong, Sungbok, et al.
Publicado: (2012)

Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data
por: Miller, Brendan F., et al.
Publicado: (2022)

A necessary and sufficient condition on diffeomorphisms
por: Li, W, et al.
Publicado: (1996)

A stably bernoullian diffeomorphism that is not Anosov
por: Shub, M, et al.
Publicado: (1998)

Diffeomorphisms on $S^{1}$, projective structures and integrable systems
por: Guha, P
Publicado: (2000)

Diffeomorphic Registration of Images with Variable Contrast Enhancement
por: Janssens, Guillaume, et al.
Publicado: (2011)

Trace anomalies and cocycles of Weyl and diffeomorphism groups
por: Karakhanian, D R, et al.
Publicado: (1994)

The cosmological constant and volume-preserving diffeomorphism invariants
por: Brooks, R
Publicado: (1993)

Vector Fields, Flows and Lie Groups of Diffeomorphisms
por: Peterman, A.
Publicado: (1999)

Area-preserving diffeomorphisms and higher-spin algebras
por: Bergshoeff, E A, et al.
Publicado: (1990)

Equilibrium states and the ergodic theory of Anosov diffeomorphisms
por: Bowen, Rufus
Publicado: (1975)

Equilibrium states and the ergodic theory of Anosov diffeomorphisms
por: Chazottes, Jean-René
Publicado: (2008)

Symmetric Diffeomorphic Modeling of Longitudinal Structural MRI
por: Ashburner, John, et al.
Publicado: (2013)

Topological classification of families of diffeomorphisms without small divisors
por: Ribn̤, Javier
Publicado: (2010)

Explicit B-spline regularization in diffeomorphic image registration
por: Tustison, Nicholas J., et al.
Publicado: (2013)

Algebra of diffeomorphism-invariant observables in Jackiw-Teitelboim gravity
por: Harlow, Daniel, et al.
Publicado: (2022)

Temporal subtraction of low-dose and relatively thick-slice CT images with large deformation diffeomorphic metric mapping and adaptive voxel matching for detection of bone metastases: A STARD-compliant article
por: Tsuchiya, Mitsuteru, et al.
Publicado: (2020)

Kac-Moody algebras, superconformal symmetries and p-brane diffeomorphisms
por: Ragoucy, E, et al.
Publicado: (1990)

An attempt to relate area-preserving diffeomorphisms to Kac-Moody algebras
por: Ragoucy, E, et al.
Publicado: (1991)

Diffeomorphic registration using geodesic shooting and Gauss–Newton optimisation
por: Ashburner, John, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_46r76q0jiqea2ubp41jl2rdsj2