Cargando…
An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization
Myopic Choroidal neovascularization (mCNV) is one of the most common vision-threatening com- plications of pathological myopia among many retinal diseases. Optical Coherence Tomography Angiography (OCTA) is an emerging newer non-invasive imaging technique and is recently being included in the invest...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10120933/ https://www.ncbi.nlm.nih.gov/pubmed/37083836 http://dx.doi.org/10.1371/journal.pone.0283929 |
_version_ | 1785029272535040000 |
---|---|
author | Deshpande, Aadit Raman, Sundaresan Dubey, Amber Susvar, Pradeep Raman, Rajiv |
author_facet | Deshpande, Aadit Raman, Sundaresan Dubey, Amber Susvar, Pradeep Raman, Rajiv |
author_sort | Deshpande, Aadit |
collection | PubMed |
description | Myopic Choroidal neovascularization (mCNV) is one of the most common vision-threatening com- plications of pathological myopia among many retinal diseases. Optical Coherence Tomography Angiography (OCTA) is an emerging newer non-invasive imaging technique and is recently being included in the investigation and treatment of mCNV. However, there exists no standard tool for time-efficient and dependable analysis of OCTA images of mCNV. In this study, we propose a customizable ImageJ macro that automates the OCTA image processing and lets users measure nine mCNV biomarkers. We developed a three-stage image processing pipeline to process the OCTA images using the macro. The images were first manually delineated, and then denoised using a Gaussian Filter. This was followed by the application of the Frangi filter and Local Adaptive thresholding. Finally, skeletonized images were obtained using the Mexican Hat filter. Nine vascular biomarkers including Junction Density, Vessel Diameter, and Fractal Dimension were then computed from the skeletonized images. The macro was tested on a 26 OCTA image dataset for all biomarkers. Two trends emerged in the computed biomarker values. First, the lesion-size dependent parameters (mCNV Area (mm(2)) Mean = 0.65, SD = 0.46) showed high variation, whereas normalized parameters (Junction Density(n/mm): Mean = 10.24, SD = 0.63) were uniform throughout the dataset. The computed values were consistent with manual measurements within existing literature. The results illustrate our ImageJ macro to be a convenient alternative for manual OCTA image processing, including provisions for batch processing and parameter customization, providing a systematic, reliable analysis of mCNV. |
format | Online Article Text |
id | pubmed-10120933 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-101209332023-04-22 An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization Deshpande, Aadit Raman, Sundaresan Dubey, Amber Susvar, Pradeep Raman, Rajiv PLoS One Research Article Myopic Choroidal neovascularization (mCNV) is one of the most common vision-threatening com- plications of pathological myopia among many retinal diseases. Optical Coherence Tomography Angiography (OCTA) is an emerging newer non-invasive imaging technique and is recently being included in the investigation and treatment of mCNV. However, there exists no standard tool for time-efficient and dependable analysis of OCTA images of mCNV. In this study, we propose a customizable ImageJ macro that automates the OCTA image processing and lets users measure nine mCNV biomarkers. We developed a three-stage image processing pipeline to process the OCTA images using the macro. The images were first manually delineated, and then denoised using a Gaussian Filter. This was followed by the application of the Frangi filter and Local Adaptive thresholding. Finally, skeletonized images were obtained using the Mexican Hat filter. Nine vascular biomarkers including Junction Density, Vessel Diameter, and Fractal Dimension were then computed from the skeletonized images. The macro was tested on a 26 OCTA image dataset for all biomarkers. Two trends emerged in the computed biomarker values. First, the lesion-size dependent parameters (mCNV Area (mm(2)) Mean = 0.65, SD = 0.46) showed high variation, whereas normalized parameters (Junction Density(n/mm): Mean = 10.24, SD = 0.63) were uniform throughout the dataset. The computed values were consistent with manual measurements within existing literature. The results illustrate our ImageJ macro to be a convenient alternative for manual OCTA image processing, including provisions for batch processing and parameter customization, providing a systematic, reliable analysis of mCNV. Public Library of Science 2023-04-21 /pmc/articles/PMC10120933/ /pubmed/37083836 http://dx.doi.org/10.1371/journal.pone.0283929 Text en © 2023 Deshpande et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Deshpande, Aadit Raman, Sundaresan Dubey, Amber Susvar, Pradeep Raman, Rajiv An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization |
title | An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization |
title_full | An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization |
title_fullStr | An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization |
title_full_unstemmed | An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization |
title_short | An ImageJ macro tool for OCTA-based quantitative analysis of Myopic Choroidal neovascularization |
title_sort | imagej macro tool for octa-based quantitative analysis of myopic choroidal neovascularization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10120933/ https://www.ncbi.nlm.nih.gov/pubmed/37083836 http://dx.doi.org/10.1371/journal.pone.0283929 |
work_keys_str_mv | AT deshpandeaadit animagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT ramansundaresan animagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT dubeyamber animagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT susvarpradeep animagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT ramanrajiv animagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT deshpandeaadit imagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT ramansundaresan imagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT dubeyamber imagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT susvarpradeep imagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization AT ramanrajiv imagejmacrotoolforoctabasedquantitativeanalysisofmyopicchoroidalneovascularization |