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Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning
Quantum-mimic Optical Coherence Tomography (Qm-OCT) images are cluttered with artefacts - parasitic peaks which emerge as a by-product of the algorithm used in this method. However, the shape and behaviour of an artefact are uniquely related to Group Velocity Dispersion (GVD) of the layer this artef...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10122646/ https://www.ncbi.nlm.nih.gov/pubmed/37087517 http://dx.doi.org/10.1038/s41598-023-32592-7 |
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author | Maliszewski, Krzysztof A. Urbańska, Magdalena A. Kolenderski, Piotr Vetrova, Varvara Kolenderska, Sylwia M. |
author_facet | Maliszewski, Krzysztof A. Urbańska, Magdalena A. Kolenderski, Piotr Vetrova, Varvara Kolenderska, Sylwia M. |
author_sort | Maliszewski, Krzysztof A. |
collection | PubMed |
description | Quantum-mimic Optical Coherence Tomography (Qm-OCT) images are cluttered with artefacts - parasitic peaks which emerge as a by-product of the algorithm used in this method. However, the shape and behaviour of an artefact are uniquely related to Group Velocity Dispersion (GVD) of the layer this artefact corresponds to and consequently, the GVD values can be inferred by carefully analysing them. Since for multi-layered objects the number of artefacts is too high to enable layer-specific analysis, we employ a solution based on Machine Learning. We train a neural network with Qm-OCT data as an input and dispersion profiles, i.e. depth distribution of GVD within an A-scan, as an output. By accounting for noise during training, we process experimental data and estimate the GVD values of BK7 and sapphire as well as provide a qualitative GVD value distribution in a grape and cucumber. Compared to other GVD-retrieving methods, our solution does not require user input, automatically provides dispersion values for all the visualised layers and is scalable. We analyse the factors affecting the accuracy of determining GVD: noise in the experimental data as well as general physical limitations of the detection of GVD-induced changes, and suggest possible solutions. |
format | Online Article Text |
id | pubmed-10122646 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101226462023-04-24 Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning Maliszewski, Krzysztof A. Urbańska, Magdalena A. Kolenderski, Piotr Vetrova, Varvara Kolenderska, Sylwia M. Sci Rep Article Quantum-mimic Optical Coherence Tomography (Qm-OCT) images are cluttered with artefacts - parasitic peaks which emerge as a by-product of the algorithm used in this method. However, the shape and behaviour of an artefact are uniquely related to Group Velocity Dispersion (GVD) of the layer this artefact corresponds to and consequently, the GVD values can be inferred by carefully analysing them. Since for multi-layered objects the number of artefacts is too high to enable layer-specific analysis, we employ a solution based on Machine Learning. We train a neural network with Qm-OCT data as an input and dispersion profiles, i.e. depth distribution of GVD within an A-scan, as an output. By accounting for noise during training, we process experimental data and estimate the GVD values of BK7 and sapphire as well as provide a qualitative GVD value distribution in a grape and cucumber. Compared to other GVD-retrieving methods, our solution does not require user input, automatically provides dispersion values for all the visualised layers and is scalable. We analyse the factors affecting the accuracy of determining GVD: noise in the experimental data as well as general physical limitations of the detection of GVD-induced changes, and suggest possible solutions. Nature Publishing Group UK 2023-04-22 /pmc/articles/PMC10122646/ /pubmed/37087517 http://dx.doi.org/10.1038/s41598-023-32592-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Maliszewski, Krzysztof A. Urbańska, Magdalena A. Kolenderski, Piotr Vetrova, Varvara Kolenderska, Sylwia M. Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning |
title | Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning |
title_full | Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning |
title_fullStr | Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning |
title_full_unstemmed | Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning |
title_short | Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning |
title_sort | extracting group velocity dispersion values using quantum-mimic optical coherence tomography and machine learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10122646/ https://www.ncbi.nlm.nih.gov/pubmed/37087517 http://dx.doi.org/10.1038/s41598-023-32592-7 |
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