Cargando…
Structural insights into the binding of bS1 to the ribosome
The multidomain ribosomal protein bS1 is the biggest and the most flexible and dynamic protein in the 30S small subunit. Despite being essential for mRNA recruitment and its primary role in the accommodation of the start codon within the decoding centre, there has not yet been a high-resolution desc...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10123108/ https://www.ncbi.nlm.nih.gov/pubmed/36840711 http://dx.doi.org/10.1093/nar/gkad126 |
_version_ | 1785029625052659712 |
---|---|
author | D’Urso, Gaetano Chat, Sophie Gillet, Reynald Giudice, Emmanuel |
author_facet | D’Urso, Gaetano Chat, Sophie Gillet, Reynald Giudice, Emmanuel |
author_sort | D’Urso, Gaetano |
collection | PubMed |
description | The multidomain ribosomal protein bS1 is the biggest and the most flexible and dynamic protein in the 30S small subunit. Despite being essential for mRNA recruitment and its primary role in the accommodation of the start codon within the decoding centre, there has not yet been a high-resolution description of its structure. Here, we present a 3D atomic model of OB1 and OB2, bS1’s first two N-terminal domains, bound to an elongation-competent 70S ribosome. Our structure reveals that, as previously reported, bS1 is anchored both by a π-stacking to the 30S subunit and via a salt bridge with the Zn(2+) pocket of bS1. These contacts are further stabilized by other interactions with additional residues on OB1. Our model also shows a new conformation of OB2, interacting with the Shine–Dalgarno portion of the mRNA. This study confirms that OB1 plays an anchoring role, but also highlights a novel function for OB2, which is directly involved in the modulation and support of mRNA binding and accommodation on the ribosome. |
format | Online Article Text |
id | pubmed-10123108 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-101231082023-04-25 Structural insights into the binding of bS1 to the ribosome D’Urso, Gaetano Chat, Sophie Gillet, Reynald Giudice, Emmanuel Nucleic Acids Res Structural Biology The multidomain ribosomal protein bS1 is the biggest and the most flexible and dynamic protein in the 30S small subunit. Despite being essential for mRNA recruitment and its primary role in the accommodation of the start codon within the decoding centre, there has not yet been a high-resolution description of its structure. Here, we present a 3D atomic model of OB1 and OB2, bS1’s first two N-terminal domains, bound to an elongation-competent 70S ribosome. Our structure reveals that, as previously reported, bS1 is anchored both by a π-stacking to the 30S subunit and via a salt bridge with the Zn(2+) pocket of bS1. These contacts are further stabilized by other interactions with additional residues on OB1. Our model also shows a new conformation of OB2, interacting with the Shine–Dalgarno portion of the mRNA. This study confirms that OB1 plays an anchoring role, but also highlights a novel function for OB2, which is directly involved in the modulation and support of mRNA binding and accommodation on the ribosome. Oxford University Press 2023-02-25 /pmc/articles/PMC10123108/ /pubmed/36840711 http://dx.doi.org/10.1093/nar/gkad126 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Structural Biology D’Urso, Gaetano Chat, Sophie Gillet, Reynald Giudice, Emmanuel Structural insights into the binding of bS1 to the ribosome |
title | Structural insights into the binding of bS1 to the ribosome |
title_full | Structural insights into the binding of bS1 to the ribosome |
title_fullStr | Structural insights into the binding of bS1 to the ribosome |
title_full_unstemmed | Structural insights into the binding of bS1 to the ribosome |
title_short | Structural insights into the binding of bS1 to the ribosome |
title_sort | structural insights into the binding of bs1 to the ribosome |
topic | Structural Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10123108/ https://www.ncbi.nlm.nih.gov/pubmed/36840711 http://dx.doi.org/10.1093/nar/gkad126 |
work_keys_str_mv | AT dursogaetano structuralinsightsintothebindingofbs1totheribosome AT chatsophie structuralinsightsintothebindingofbs1totheribosome AT gilletreynald structuralinsightsintothebindingofbs1totheribosome AT giudiceemmanuel structuralinsightsintothebindingofbs1totheribosome |