Cargando…

Structural insights into the binding of bS1 to the ribosome

The multidomain ribosomal protein bS1 is the biggest and the most flexible and dynamic protein in the 30S small subunit. Despite being essential for mRNA recruitment and its primary role in the accommodation of the start codon within the decoding centre, there has not yet been a high-resolution desc...

Descripción completa

Detalles Bibliográficos
Autores principales: D’Urso, Gaetano, Chat, Sophie, Gillet, Reynald, Giudice, Emmanuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10123108/
https://www.ncbi.nlm.nih.gov/pubmed/36840711
http://dx.doi.org/10.1093/nar/gkad126
_version_ 1785029625052659712
author D’Urso, Gaetano
Chat, Sophie
Gillet, Reynald
Giudice, Emmanuel
author_facet D’Urso, Gaetano
Chat, Sophie
Gillet, Reynald
Giudice, Emmanuel
author_sort D’Urso, Gaetano
collection PubMed
description The multidomain ribosomal protein bS1 is the biggest and the most flexible and dynamic protein in the 30S small subunit. Despite being essential for mRNA recruitment and its primary role in the accommodation of the start codon within the decoding centre, there has not yet been a high-resolution description of its structure. Here, we present a 3D atomic model of OB1 and OB2, bS1’s first two N-terminal domains, bound to an elongation-competent 70S ribosome. Our structure reveals that, as previously reported, bS1 is anchored both by a π-stacking to the 30S subunit and via a salt bridge with the Zn(2+) pocket of bS1. These contacts are further stabilized by other interactions with additional residues on OB1. Our model also shows a new conformation of OB2, interacting with the Shine–Dalgarno portion of the mRNA. This study confirms that OB1 plays an anchoring role, but also highlights a novel function for OB2, which is directly involved in the modulation and support of mRNA binding and accommodation on the ribosome.
format Online
Article
Text
id pubmed-10123108
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-101231082023-04-25 Structural insights into the binding of bS1 to the ribosome D’Urso, Gaetano Chat, Sophie Gillet, Reynald Giudice, Emmanuel Nucleic Acids Res Structural Biology The multidomain ribosomal protein bS1 is the biggest and the most flexible and dynamic protein in the 30S small subunit. Despite being essential for mRNA recruitment and its primary role in the accommodation of the start codon within the decoding centre, there has not yet been a high-resolution description of its structure. Here, we present a 3D atomic model of OB1 and OB2, bS1’s first two N-terminal domains, bound to an elongation-competent 70S ribosome. Our structure reveals that, as previously reported, bS1 is anchored both by a π-stacking to the 30S subunit and via a salt bridge with the Zn(2+) pocket of bS1. These contacts are further stabilized by other interactions with additional residues on OB1. Our model also shows a new conformation of OB2, interacting with the Shine–Dalgarno portion of the mRNA. This study confirms that OB1 plays an anchoring role, but also highlights a novel function for OB2, which is directly involved in the modulation and support of mRNA binding and accommodation on the ribosome. Oxford University Press 2023-02-25 /pmc/articles/PMC10123108/ /pubmed/36840711 http://dx.doi.org/10.1093/nar/gkad126 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Structural Biology
D’Urso, Gaetano
Chat, Sophie
Gillet, Reynald
Giudice, Emmanuel
Structural insights into the binding of bS1 to the ribosome
title Structural insights into the binding of bS1 to the ribosome
title_full Structural insights into the binding of bS1 to the ribosome
title_fullStr Structural insights into the binding of bS1 to the ribosome
title_full_unstemmed Structural insights into the binding of bS1 to the ribosome
title_short Structural insights into the binding of bS1 to the ribosome
title_sort structural insights into the binding of bs1 to the ribosome
topic Structural Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10123108/
https://www.ncbi.nlm.nih.gov/pubmed/36840711
http://dx.doi.org/10.1093/nar/gkad126
work_keys_str_mv AT dursogaetano structuralinsightsintothebindingofbs1totheribosome
AT chatsophie structuralinsightsintothebindingofbs1totheribosome
AT gilletreynald structuralinsightsintothebindingofbs1totheribosome
AT giudiceemmanuel structuralinsightsintothebindingofbs1totheribosome