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Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction

Memory is an essential element in information processing devices. We investigated a network formed by just three interacting nodes representing continuously stirred tank reactors (CSTRs) in which the glycolytic reaction proceeds as a potential realization of a chemical memory unit. Our study is base...

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Autores principales: Gorecki, Jerzy, Muzika, Frantisek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10123649/
https://www.ncbi.nlm.nih.gov/pubmed/37092406
http://dx.doi.org/10.3390/biomimetics8020154
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author Gorecki, Jerzy
Muzika, Frantisek
author_facet Gorecki, Jerzy
Muzika, Frantisek
author_sort Gorecki, Jerzy
collection PubMed
description Memory is an essential element in information processing devices. We investigated a network formed by just three interacting nodes representing continuously stirred tank reactors (CSTRs) in which the glycolytic reaction proceeds as a potential realization of a chemical memory unit. Our study is based on the 2-variable computational model of the reaction. The model parameters were selected such that the system has a stable limit cycle and several distinct, discrete Turing patterns characterized by stationary concentrations at the nodes. In our interpretation, oscillations represent a blank memory unit, and Turing patterns code information. The considered memory can preserve information on one of six different symbols. The time evolution of the nodes was individually controlled by the inflow of ATP. We demonstrate that information can be written with a simple and short perturbation of the inflow. The perturbation applies to only one or two nodes, and it is symbol specific. The memory can be erased with identical inflow perturbation applied to all nodes. The presented idea of pattern-coded memory applies to other reaction networks that allow for discrete Turing patterns. Moreover, it hints at the experimental realization of memory in a simple system with the glycolytic reaction.
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spelling pubmed-101236492023-04-25 Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction Gorecki, Jerzy Muzika, Frantisek Biomimetics (Basel) Article Memory is an essential element in information processing devices. We investigated a network formed by just three interacting nodes representing continuously stirred tank reactors (CSTRs) in which the glycolytic reaction proceeds as a potential realization of a chemical memory unit. Our study is based on the 2-variable computational model of the reaction. The model parameters were selected such that the system has a stable limit cycle and several distinct, discrete Turing patterns characterized by stationary concentrations at the nodes. In our interpretation, oscillations represent a blank memory unit, and Turing patterns code information. The considered memory can preserve information on one of six different symbols. The time evolution of the nodes was individually controlled by the inflow of ATP. We demonstrate that information can be written with a simple and short perturbation of the inflow. The perturbation applies to only one or two nodes, and it is symbol specific. The memory can be erased with identical inflow perturbation applied to all nodes. The presented idea of pattern-coded memory applies to other reaction networks that allow for discrete Turing patterns. Moreover, it hints at the experimental realization of memory in a simple system with the glycolytic reaction. MDPI 2023-04-13 /pmc/articles/PMC10123649/ /pubmed/37092406 http://dx.doi.org/10.3390/biomimetics8020154 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Gorecki, Jerzy
Muzika, Frantisek
Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction
title Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction
title_full Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction
title_fullStr Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction
title_full_unstemmed Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction
title_short Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction
title_sort chemical memory with discrete turing patterns appearing in the glycolytic reaction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10123649/
https://www.ncbi.nlm.nih.gov/pubmed/37092406
http://dx.doi.org/10.3390/biomimetics8020154
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