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Expression characteristics and their functional role of IGFBP gene family in pan-cancer
BACKGROUND: Insulin-like growth factor binding proteins (IGFBPs) are critical regulators of the biological activities of insulin-like growth factors. The IGFBP family plays diverse roles in different types of cancer, which we still lack comprehensive and pleiotropic understandings so far. METHODS: M...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10124011/ https://www.ncbi.nlm.nih.gov/pubmed/37088808 http://dx.doi.org/10.1186/s12885-023-10832-3 |
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author | Liu, Yingnan Shen, Shixuan Yan, Ziwei Yan, Lirong Ding, Hanxi Wang, Ang Xu, Qian Sun, Liping Yuan, Yuan |
author_facet | Liu, Yingnan Shen, Shixuan Yan, Ziwei Yan, Lirong Ding, Hanxi Wang, Ang Xu, Qian Sun, Liping Yuan, Yuan |
author_sort | Liu, Yingnan |
collection | PubMed |
description | BACKGROUND: Insulin-like growth factor binding proteins (IGFBPs) are critical regulators of the biological activities of insulin-like growth factors. The IGFBP family plays diverse roles in different types of cancer, which we still lack comprehensive and pleiotropic understandings so far. METHODS: Multi-source and multi-dimensional data, extracted from The Cancer Genome Atlas (TCGA), Oncomine, Cancer Cell Line Encyclopedia (CCLE), and the Human Protein Atlas (HPA) was used for bioinformatics analysis by R language. Immunohistochemistry and qRT-PCR were performed to validate the results of the database analysis results. Bibliometrics and literature review were used for summarizing the research progress of IGFBPs in the field of tumor. RESULTS: The members of IGFBP gene family are differentially expressed in various cancer types. IGFBPs expression can affect prognosis of different cancers. The expression of IGFBPs expression is associated with multiple signal transduction pathways. The expression of IGFBPs is significantly correlated with tumor mutational burden, microsatellite instability, tumor stemness and tumor immune microenvironment. The qRT-PCR experiments verified the lower expression of IGFBP2 and IGFBP6 in gastric cancer and the lower expression of IGFBP6 in colorectal cancer. Immunohistochemistry validated a marked downregulation of IGFBP2 protein in gastric cancer tissues. The keywords co-occurrence analysis of IGFBP related publications in cancer showed relative research have been more concentrating on the potential of IGFBPs as tumor diagnostic and prognostic markers and developing cancer therapies. CONCLUSIONS: These findings provide frontier trend of IGFBPs related research and new clues for identifying novel therapeutic targets for various cancers. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-023-10832-3. |
format | Online Article Text |
id | pubmed-10124011 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-101240112023-04-25 Expression characteristics and their functional role of IGFBP gene family in pan-cancer Liu, Yingnan Shen, Shixuan Yan, Ziwei Yan, Lirong Ding, Hanxi Wang, Ang Xu, Qian Sun, Liping Yuan, Yuan BMC Cancer Research BACKGROUND: Insulin-like growth factor binding proteins (IGFBPs) are critical regulators of the biological activities of insulin-like growth factors. The IGFBP family plays diverse roles in different types of cancer, which we still lack comprehensive and pleiotropic understandings so far. METHODS: Multi-source and multi-dimensional data, extracted from The Cancer Genome Atlas (TCGA), Oncomine, Cancer Cell Line Encyclopedia (CCLE), and the Human Protein Atlas (HPA) was used for bioinformatics analysis by R language. Immunohistochemistry and qRT-PCR were performed to validate the results of the database analysis results. Bibliometrics and literature review were used for summarizing the research progress of IGFBPs in the field of tumor. RESULTS: The members of IGFBP gene family are differentially expressed in various cancer types. IGFBPs expression can affect prognosis of different cancers. The expression of IGFBPs expression is associated with multiple signal transduction pathways. The expression of IGFBPs is significantly correlated with tumor mutational burden, microsatellite instability, tumor stemness and tumor immune microenvironment. The qRT-PCR experiments verified the lower expression of IGFBP2 and IGFBP6 in gastric cancer and the lower expression of IGFBP6 in colorectal cancer. Immunohistochemistry validated a marked downregulation of IGFBP2 protein in gastric cancer tissues. The keywords co-occurrence analysis of IGFBP related publications in cancer showed relative research have been more concentrating on the potential of IGFBPs as tumor diagnostic and prognostic markers and developing cancer therapies. CONCLUSIONS: These findings provide frontier trend of IGFBPs related research and new clues for identifying novel therapeutic targets for various cancers. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12885-023-10832-3. BioMed Central 2023-04-24 /pmc/articles/PMC10124011/ /pubmed/37088808 http://dx.doi.org/10.1186/s12885-023-10832-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Liu, Yingnan Shen, Shixuan Yan, Ziwei Yan, Lirong Ding, Hanxi Wang, Ang Xu, Qian Sun, Liping Yuan, Yuan Expression characteristics and their functional role of IGFBP gene family in pan-cancer |
title | Expression characteristics and their functional role of IGFBP gene family in pan-cancer |
title_full | Expression characteristics and their functional role of IGFBP gene family in pan-cancer |
title_fullStr | Expression characteristics and their functional role of IGFBP gene family in pan-cancer |
title_full_unstemmed | Expression characteristics and their functional role of IGFBP gene family in pan-cancer |
title_short | Expression characteristics and their functional role of IGFBP gene family in pan-cancer |
title_sort | expression characteristics and their functional role of igfbp gene family in pan-cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10124011/ https://www.ncbi.nlm.nih.gov/pubmed/37088808 http://dx.doi.org/10.1186/s12885-023-10832-3 |
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