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Cytochromes P450 involved in bacterial RiPP biosyntheses

 : Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a large class of secondary metabolites that have garnered scientific attention due to their complex scaffolds with potential roles in medicine, agriculture, and chemical ecology. RiPPs derive from the cleavage of ribos...

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Autores principales: Kunakom, Sylvia, Otani, Hiroshi, Udwary, Daniel W, Doering, Drew T, Mouncey, Nigel J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10124130/
https://www.ncbi.nlm.nih.gov/pubmed/36931895
http://dx.doi.org/10.1093/jimb/kuad005
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author Kunakom, Sylvia
Otani, Hiroshi
Udwary, Daniel W
Doering, Drew T
Mouncey, Nigel J
author_facet Kunakom, Sylvia
Otani, Hiroshi
Udwary, Daniel W
Doering, Drew T
Mouncey, Nigel J
author_sort Kunakom, Sylvia
collection PubMed
description  : Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a large class of secondary metabolites that have garnered scientific attention due to their complex scaffolds with potential roles in medicine, agriculture, and chemical ecology. RiPPs derive from the cleavage of ribosomally synthesized proteins and additional modifications, catalyzed by various enzymes to alter the peptide backbone or side chains. Of these enzymes, cytochromes P450 (P450s) are a superfamily of heme-thiolate proteins involved in many metabolic pathways, including RiPP biosyntheses. In this review, we focus our discussion on P450 involved in RiPP pathways and the unique chemical transformations they mediate. Previous studies have revealed a wealth of P450s distributed across all domains of life. While the number of characterized P450s involved in RiPP biosyntheses is relatively small, they catalyze various enzymatic reactions such as C–C or C–N bond formation. Formation of some RiPPs is catalyzed by more than one P450, enabling structural diversity. With the continuous improvement of the bioinformatic tools for RiPP prediction and advancement in synthetic biology techniques, it is expected that further cytochrome P450-mediated RiPP biosynthetic pathways will be discovered. SUMMARY: The presence of genes encoding P450s in gene clusters for ribosomally synthesized and post-translationally modified peptides expand structural and functional diversity of these secondary metabolites, and here, we review the current state of this knowledge.
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spelling pubmed-101241302023-04-25 Cytochromes P450 involved in bacterial RiPP biosyntheses Kunakom, Sylvia Otani, Hiroshi Udwary, Daniel W Doering, Drew T Mouncey, Nigel J J Ind Microbiol Biotechnol Natural Products  : Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a large class of secondary metabolites that have garnered scientific attention due to their complex scaffolds with potential roles in medicine, agriculture, and chemical ecology. RiPPs derive from the cleavage of ribosomally synthesized proteins and additional modifications, catalyzed by various enzymes to alter the peptide backbone or side chains. Of these enzymes, cytochromes P450 (P450s) are a superfamily of heme-thiolate proteins involved in many metabolic pathways, including RiPP biosyntheses. In this review, we focus our discussion on P450 involved in RiPP pathways and the unique chemical transformations they mediate. Previous studies have revealed a wealth of P450s distributed across all domains of life. While the number of characterized P450s involved in RiPP biosyntheses is relatively small, they catalyze various enzymatic reactions such as C–C or C–N bond formation. Formation of some RiPPs is catalyzed by more than one P450, enabling structural diversity. With the continuous improvement of the bioinformatic tools for RiPP prediction and advancement in synthetic biology techniques, it is expected that further cytochrome P450-mediated RiPP biosynthetic pathways will be discovered. SUMMARY: The presence of genes encoding P450s in gene clusters for ribosomally synthesized and post-translationally modified peptides expand structural and functional diversity of these secondary metabolites, and here, we review the current state of this knowledge. Oxford University Press 2023-03-17 /pmc/articles/PMC10124130/ /pubmed/36931895 http://dx.doi.org/10.1093/jimb/kuad005 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Natural Products
Kunakom, Sylvia
Otani, Hiroshi
Udwary, Daniel W
Doering, Drew T
Mouncey, Nigel J
Cytochromes P450 involved in bacterial RiPP biosyntheses
title Cytochromes P450 involved in bacterial RiPP biosyntheses
title_full Cytochromes P450 involved in bacterial RiPP biosyntheses
title_fullStr Cytochromes P450 involved in bacterial RiPP biosyntheses
title_full_unstemmed Cytochromes P450 involved in bacterial RiPP biosyntheses
title_short Cytochromes P450 involved in bacterial RiPP biosyntheses
title_sort cytochromes p450 involved in bacterial ripp biosyntheses
topic Natural Products
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10124130/
https://www.ncbi.nlm.nih.gov/pubmed/36931895
http://dx.doi.org/10.1093/jimb/kuad005
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