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Addressable and adaptable intercellular communication via DNA messaging

Engineered consortia are a major research focus for synthetic biologists because they can implement sophisticated behaviors inaccessible to single-strain systems. However, this functional capacity is constrained by their constituent strains’ ability to engage in complex communication. DNA messaging,...

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Detalles Bibliográficos
Autores principales: Marken, John P., Murray, Richard M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10126159/
https://www.ncbi.nlm.nih.gov/pubmed/37095088
http://dx.doi.org/10.1038/s41467-023-37788-z
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author Marken, John P.
Murray, Richard M.
author_facet Marken, John P.
Murray, Richard M.
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description Engineered consortia are a major research focus for synthetic biologists because they can implement sophisticated behaviors inaccessible to single-strain systems. However, this functional capacity is constrained by their constituent strains’ ability to engage in complex communication. DNA messaging, by enabling information-rich channel-decoupled communication, is a promising candidate architecture for implementing complex communication. But its major advantage, its messages’ dynamic mutability, is still unexplored. We develop a framework for addressable and adaptable DNA messaging that leverages all three of these advantages and implement it using plasmid conjugation in E. coli. Our system can bias the transfer of messages to targeted receiver strains by 100- to 1000-fold, and their recipient lists can be dynamically updated in situ to control the flow of information through the population. This work lays the foundation for future developments that further utilize the unique advantages of DNA messaging to engineer previously-inaccessible levels of complexity into biological systems.
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spelling pubmed-101261592023-04-26 Addressable and adaptable intercellular communication via DNA messaging Marken, John P. Murray, Richard M. Nat Commun Article Engineered consortia are a major research focus for synthetic biologists because they can implement sophisticated behaviors inaccessible to single-strain systems. However, this functional capacity is constrained by their constituent strains’ ability to engage in complex communication. DNA messaging, by enabling information-rich channel-decoupled communication, is a promising candidate architecture for implementing complex communication. But its major advantage, its messages’ dynamic mutability, is still unexplored. We develop a framework for addressable and adaptable DNA messaging that leverages all three of these advantages and implement it using plasmid conjugation in E. coli. Our system can bias the transfer of messages to targeted receiver strains by 100- to 1000-fold, and their recipient lists can be dynamically updated in situ to control the flow of information through the population. This work lays the foundation for future developments that further utilize the unique advantages of DNA messaging to engineer previously-inaccessible levels of complexity into biological systems. Nature Publishing Group UK 2023-04-24 /pmc/articles/PMC10126159/ /pubmed/37095088 http://dx.doi.org/10.1038/s41467-023-37788-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Marken, John P.
Murray, Richard M.
Addressable and adaptable intercellular communication via DNA messaging
title Addressable and adaptable intercellular communication via DNA messaging
title_full Addressable and adaptable intercellular communication via DNA messaging
title_fullStr Addressable and adaptable intercellular communication via DNA messaging
title_full_unstemmed Addressable and adaptable intercellular communication via DNA messaging
title_short Addressable and adaptable intercellular communication via DNA messaging
title_sort addressable and adaptable intercellular communication via dna messaging
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10126159/
https://www.ncbi.nlm.nih.gov/pubmed/37095088
http://dx.doi.org/10.1038/s41467-023-37788-z
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