Cargando…

Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour

BACKGROUND: The transition of the myometrium from a quiescent to a contractile state during labour is known to involve inflammation, which is characterized by the infiltration of immune cells and the secretion of cytokines. However, the specific cellular mechanisms underlying inflammation in the myo...

Descripción completa

Detalles Bibliográficos
Autores principales: Ji, Kaiyuan, Chen, Lina, Wang, Xiaodi, Wen, Bolun, Yang, Fan, Deng, Wenfeng, Chen, Yunshan, Zhang, Guozheng, Liu, Huishu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10126311/
https://www.ncbi.nlm.nih.gov/pubmed/37095651
http://dx.doi.org/10.1002/ctm2.1234
_version_ 1785030213708546048
author Ji, Kaiyuan
Chen, Lina
Wang, Xiaodi
Wen, Bolun
Yang, Fan
Deng, Wenfeng
Chen, Yunshan
Zhang, Guozheng
Liu, Huishu
author_facet Ji, Kaiyuan
Chen, Lina
Wang, Xiaodi
Wen, Bolun
Yang, Fan
Deng, Wenfeng
Chen, Yunshan
Zhang, Guozheng
Liu, Huishu
author_sort Ji, Kaiyuan
collection PubMed
description BACKGROUND: The transition of the myometrium from a quiescent to a contractile state during labour is known to involve inflammation, which is characterized by the infiltration of immune cells and the secretion of cytokines. However, the specific cellular mechanisms underlying inflammation in the myometrium during human parturition are not yet fully understood. METHODS: Through the analysis of transcriptomics, proteomics, and cytokine arrays, the inflammation in the human myometrium during labour was revealed. By performing single‐cell RNA sequencing (scRNA‐seq) and spatiotemporal transcriptomic (ST) analyses on human myometrium in term in labour (TIL) and term in non‐labour (TNL), we established a comprehensive landscape of immune cells, their transcriptional characteristics, distribution, function and intercellular communications during labour. Histological staining, flow cytometry, and western blotting were applied to validate some results from scRNA‐seq and ST. RESULTS: Our analysis identified immune cell types, including monocytes, neutrophils, T cells, natural killer (NK) cells and B cells, present in the myometrium. TIL myometrium had a higher proportion of monocytes and neutrophils than TNL myometrium. Furthermore, the scRNA‐seq analysis showed an increase in M1 macrophages in TIL myometrium. CXCL8 expression was mainly observed in neutrophils and increased in TIL myometrium. CCL3 and CCL4 were principally expressed in M2 macrophages and neutrophils‐6, and decreased during labour; XCL1 and XCL2 were specifically expressed in NK cells, and decreased during labour. Analysis of cytokine receptor expression revealed an increase in IL1R2, which primarily expressed in neutrophils. Finally, we visualized the spatial proximity of representative cytokines, contraction‐associated genes, and corresponding receptors in ST to demonstrate their location within the myometrium. CONCLUSIONS: Our analysis comprehensively revealed changes in immune cells, cytokines, and cytokine receptors during labour. It provided a valuable resource to detect and characterize inflammatory changes, yielding insights into the immune mechanisms underlying labour.
format Online
Article
Text
id pubmed-10126311
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-101263112023-04-26 Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour Ji, Kaiyuan Chen, Lina Wang, Xiaodi Wen, Bolun Yang, Fan Deng, Wenfeng Chen, Yunshan Zhang, Guozheng Liu, Huishu Clin Transl Med Research Articles BACKGROUND: The transition of the myometrium from a quiescent to a contractile state during labour is known to involve inflammation, which is characterized by the infiltration of immune cells and the secretion of cytokines. However, the specific cellular mechanisms underlying inflammation in the myometrium during human parturition are not yet fully understood. METHODS: Through the analysis of transcriptomics, proteomics, and cytokine arrays, the inflammation in the human myometrium during labour was revealed. By performing single‐cell RNA sequencing (scRNA‐seq) and spatiotemporal transcriptomic (ST) analyses on human myometrium in term in labour (TIL) and term in non‐labour (TNL), we established a comprehensive landscape of immune cells, their transcriptional characteristics, distribution, function and intercellular communications during labour. Histological staining, flow cytometry, and western blotting were applied to validate some results from scRNA‐seq and ST. RESULTS: Our analysis identified immune cell types, including monocytes, neutrophils, T cells, natural killer (NK) cells and B cells, present in the myometrium. TIL myometrium had a higher proportion of monocytes and neutrophils than TNL myometrium. Furthermore, the scRNA‐seq analysis showed an increase in M1 macrophages in TIL myometrium. CXCL8 expression was mainly observed in neutrophils and increased in TIL myometrium. CCL3 and CCL4 were principally expressed in M2 macrophages and neutrophils‐6, and decreased during labour; XCL1 and XCL2 were specifically expressed in NK cells, and decreased during labour. Analysis of cytokine receptor expression revealed an increase in IL1R2, which primarily expressed in neutrophils. Finally, we visualized the spatial proximity of representative cytokines, contraction‐associated genes, and corresponding receptors in ST to demonstrate their location within the myometrium. CONCLUSIONS: Our analysis comprehensively revealed changes in immune cells, cytokines, and cytokine receptors during labour. It provided a valuable resource to detect and characterize inflammatory changes, yielding insights into the immune mechanisms underlying labour. John Wiley and Sons Inc. 2023-04-24 /pmc/articles/PMC10126311/ /pubmed/37095651 http://dx.doi.org/10.1002/ctm2.1234 Text en © 2023 The Authors. Clinical and Translational Medicine published by John Wiley & Sons Australia, Ltd on behalf of Shanghai Institute of Clinical Bioinformatics. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Ji, Kaiyuan
Chen, Lina
Wang, Xiaodi
Wen, Bolun
Yang, Fan
Deng, Wenfeng
Chen, Yunshan
Zhang, Guozheng
Liu, Huishu
Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
title Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
title_full Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
title_fullStr Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
title_full_unstemmed Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
title_short Integrating single‐cell RNA sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
title_sort integrating single‐cell rna sequencing with spatial transcriptomics reveals an immune landscape of human myometrium during labour
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10126311/
https://www.ncbi.nlm.nih.gov/pubmed/37095651
http://dx.doi.org/10.1002/ctm2.1234
work_keys_str_mv AT jikaiyuan integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT chenlina integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT wangxiaodi integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT wenbolun integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT yangfan integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT dengwenfeng integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT chenyunshan integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT zhangguozheng integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour
AT liuhuishu integratingsinglecellrnasequencingwithspatialtranscriptomicsrevealsanimmunelandscapeofhumanmyometriumduringlabour