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Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer

BACKGROUND: Necroptosis is a novel type of programmed cell death distinct from apoptosis. However, the role of necroptosis in ovarian cancer (OC) remains unclear. The present study investigated the prognostic value of necroptosis-related genes (NRGs) and the immune landscape in OC. METHODS: The gene...

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Autores principales: Nie, Sipei, Ni, Na, Chen, Ningxin, Gong, Min, Feng, Ercui, Liu, Jinhui, Liu, Qiaoling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10127035/
https://www.ncbi.nlm.nih.gov/pubmed/37095524
http://dx.doi.org/10.1186/s13048-023-01155-9
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author Nie, Sipei
Ni, Na
Chen, Ningxin
Gong, Min
Feng, Ercui
Liu, Jinhui
Liu, Qiaoling
author_facet Nie, Sipei
Ni, Na
Chen, Ningxin
Gong, Min
Feng, Ercui
Liu, Jinhui
Liu, Qiaoling
author_sort Nie, Sipei
collection PubMed
description BACKGROUND: Necroptosis is a novel type of programmed cell death distinct from apoptosis. However, the role of necroptosis in ovarian cancer (OC) remains unclear. The present study investigated the prognostic value of necroptosis-related genes (NRGs) and the immune landscape in OC. METHODS: The gene expression profiling and clinical information were downloaded from the TCGA and GTEx databases. Differentially expressed NRGs (DE-NRGs) between OC and normal tissueswere identified. The regression analyses were conducted to screen the prognostic NRGs and construct the predictive risk model. Patients were then divided into high- and low-risk groups, and the GO and KEGG analyses were performed to explore bioinformatics functions between the two groups. Subsequently, the risk level and immune status correlations were assessed through the ESTIMATE and CIBERSORT algorithms. The tumor mutation burden (TMB) and the drug sensitivity were also analyzed based on the two-NRG signature in OC. RESULTS: Totally 42 DE-NRGs were identified in OC. The regression analyses screened out two NRGs (MAPK10 and STAT4) with prognostic values for overall survival. The ROC curve showed a better predictive ability in five-year OS using the risk score. Immune-related functions were significantly enriched in the high- and low-risk group. Macrophages M1, T cells CD4 memory activated, T cells CD8, and T cells regulatory infiltration immune cells were associated with the low-risk score. The lower tumor microenvironment score was demonstrated in the high-risk group. Patients with lower TMB in the low-risk group showed a better prognosis, and a lower TIDE score suggested a better immune checkpoint inhibitor response in the high-risk group. Besides, cisplatin and paclitaxel were found to be more sensitive in the low-risk group. CONCLUSIONS: MAPK10 and STAT4 can be important prognosis factors in OC, and the two-gene signature performs well in predicting survival outcomes. Our study provided novel ways of OC prognosis estimation and potential treatment strategy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13048-023-01155-9.
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spelling pubmed-101270352023-04-26 Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer Nie, Sipei Ni, Na Chen, Ningxin Gong, Min Feng, Ercui Liu, Jinhui Liu, Qiaoling J Ovarian Res Research BACKGROUND: Necroptosis is a novel type of programmed cell death distinct from apoptosis. However, the role of necroptosis in ovarian cancer (OC) remains unclear. The present study investigated the prognostic value of necroptosis-related genes (NRGs) and the immune landscape in OC. METHODS: The gene expression profiling and clinical information were downloaded from the TCGA and GTEx databases. Differentially expressed NRGs (DE-NRGs) between OC and normal tissueswere identified. The regression analyses were conducted to screen the prognostic NRGs and construct the predictive risk model. Patients were then divided into high- and low-risk groups, and the GO and KEGG analyses were performed to explore bioinformatics functions between the two groups. Subsequently, the risk level and immune status correlations were assessed through the ESTIMATE and CIBERSORT algorithms. The tumor mutation burden (TMB) and the drug sensitivity were also analyzed based on the two-NRG signature in OC. RESULTS: Totally 42 DE-NRGs were identified in OC. The regression analyses screened out two NRGs (MAPK10 and STAT4) with prognostic values for overall survival. The ROC curve showed a better predictive ability in five-year OS using the risk score. Immune-related functions were significantly enriched in the high- and low-risk group. Macrophages M1, T cells CD4 memory activated, T cells CD8, and T cells regulatory infiltration immune cells were associated with the low-risk score. The lower tumor microenvironment score was demonstrated in the high-risk group. Patients with lower TMB in the low-risk group showed a better prognosis, and a lower TIDE score suggested a better immune checkpoint inhibitor response in the high-risk group. Besides, cisplatin and paclitaxel were found to be more sensitive in the low-risk group. CONCLUSIONS: MAPK10 and STAT4 can be important prognosis factors in OC, and the two-gene signature performs well in predicting survival outcomes. Our study provided novel ways of OC prognosis estimation and potential treatment strategy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13048-023-01155-9. BioMed Central 2023-04-25 /pmc/articles/PMC10127035/ /pubmed/37095524 http://dx.doi.org/10.1186/s13048-023-01155-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Nie, Sipei
Ni, Na
Chen, Ningxin
Gong, Min
Feng, Ercui
Liu, Jinhui
Liu, Qiaoling
Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
title Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
title_full Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
title_fullStr Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
title_full_unstemmed Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
title_short Development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
title_sort development of a necroptosis-related gene signature and the immune landscape in ovarian cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10127035/
https://www.ncbi.nlm.nih.gov/pubmed/37095524
http://dx.doi.org/10.1186/s13048-023-01155-9
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