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Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies

Objectives: Pancreatic adenocarcinoma (PAAD) is a highly malignant tumor. Despite extensive research, the precise role of aging-related genes in the initiation, microenvironment regulation, and progression of PAAD remains unclear. Methods: Patients with PAAD were selected from the International Canc...

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Autores principales: Zhao, Junjie, Guan, Kelei, Xing, Jiyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10127222/
https://www.ncbi.nlm.nih.gov/pubmed/37072128
http://dx.doi.org/10.1177/03946320231172072
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author Zhao, Junjie
Guan, Kelei
Xing, Jiyuan
author_facet Zhao, Junjie
Guan, Kelei
Xing, Jiyuan
author_sort Zhao, Junjie
collection PubMed
description Objectives: Pancreatic adenocarcinoma (PAAD) is a highly malignant tumor. Despite extensive research, the precise role of aging-related genes in the initiation, microenvironment regulation, and progression of PAAD remains unclear. Methods: Patients with PAAD were selected from the International Cancer Genome Consortium (ICGC), and The Cancer Genome Atlas (TCGA) cohorts and the cell senescence-associated genes were obtained from CellAge. ConsensusClusterPlus was utilized for cluster identification. The least absolute shrinkage and selection operator (LASSO) Cox regression analysis was performed to construct a prognosis prediction model. Results: We identified three clusters (C1, C2, and C3) based on aging-associated gene profiles. The C1 cluster had a shorter overall survival time, advanced clinical grades, lower immune ESTIMATE score, and tumor immune dysfunction and exclusion (TIDE) score than the C3 subgroup. Moreover, signaling pathways for cell cycle activation were enriched in the C1 cluster. We also identified eight hub genes and constructed a risk model. The high cellular senescence-related signature (CSRS) score subtype exhibited poor prognosis, advanced clinical grades, M2 macrophage infiltration, higher immune checkpoint gene expression, and lower immunotherapeutic benefits. Conclusion: Our risk score model shows high prediction accuracy and survival prediction ability in individual clinical prognosis and pre-immunotherapy evaluation.
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spelling pubmed-101272222023-04-26 Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies Zhao, Junjie Guan, Kelei Xing, Jiyuan Int J Immunopathol Pharmacol Original Research Article Objectives: Pancreatic adenocarcinoma (PAAD) is a highly malignant tumor. Despite extensive research, the precise role of aging-related genes in the initiation, microenvironment regulation, and progression of PAAD remains unclear. Methods: Patients with PAAD were selected from the International Cancer Genome Consortium (ICGC), and The Cancer Genome Atlas (TCGA) cohorts and the cell senescence-associated genes were obtained from CellAge. ConsensusClusterPlus was utilized for cluster identification. The least absolute shrinkage and selection operator (LASSO) Cox regression analysis was performed to construct a prognosis prediction model. Results: We identified three clusters (C1, C2, and C3) based on aging-associated gene profiles. The C1 cluster had a shorter overall survival time, advanced clinical grades, lower immune ESTIMATE score, and tumor immune dysfunction and exclusion (TIDE) score than the C3 subgroup. Moreover, signaling pathways for cell cycle activation were enriched in the C1 cluster. We also identified eight hub genes and constructed a risk model. The high cellular senescence-related signature (CSRS) score subtype exhibited poor prognosis, advanced clinical grades, M2 macrophage infiltration, higher immune checkpoint gene expression, and lower immunotherapeutic benefits. Conclusion: Our risk score model shows high prediction accuracy and survival prediction ability in individual clinical prognosis and pre-immunotherapy evaluation. SAGE Publications 2023-04-18 /pmc/articles/PMC10127222/ /pubmed/37072128 http://dx.doi.org/10.1177/03946320231172072 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Research Article
Zhao, Junjie
Guan, Kelei
Xing, Jiyuan
Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
title Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
title_full Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
title_fullStr Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
title_full_unstemmed Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
title_short Construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
title_sort construction and evaluation of an aging-associated genes-based model for pancreatic adenocarcinoma prognosis and therapies
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10127222/
https://www.ncbi.nlm.nih.gov/pubmed/37072128
http://dx.doi.org/10.1177/03946320231172072
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AT guankelei constructionandevaluationofanagingassociatedgenesbasedmodelforpancreaticadenocarcinomaprognosisandtherapies
AT xingjiyuan constructionandevaluationofanagingassociatedgenesbasedmodelforpancreaticadenocarcinomaprognosisandtherapies