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285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies

OBJECTIVES/GOALS: Congenital anomalies (CA) are common, but the cause is often unknown. The interplay between known environmental teratogens, such as medication use in pregnancy, and genetic predisposition impacts CA risk, but such interactions are poorly understood. We test the hypothesis that phar...

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Autores principales: Brokamp, Elly, Shuey, Megan, Miller-Flemming, Tyne, Cox, Nancy J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10129702/
http://dx.doi.org/10.1017/cts.2023.341
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author Brokamp, Elly
Shuey, Megan
Miller-Flemming, Tyne
Cox, Nancy J.
author_facet Brokamp, Elly
Shuey, Megan
Miller-Flemming, Tyne
Cox, Nancy J.
author_sort Brokamp, Elly
collection PubMed
description OBJECTIVES/GOALS: Congenital anomalies (CA) are common, but the cause is often unknown. The interplay between known environmental teratogens, such as medication use in pregnancy, and genetic predisposition impacts CA risk, but such interactions are poorly understood. We test the hypothesis that pharmacogenomic (PGx) variation impacts CA risk. METHODS/STUDY POPULATION: We performed a drug absorption, distribution, metabolism, and excretion (ADME) gene-wide association study (GWAS), which tests for a possible association between ADME gene single nucleotide polymorphisms and individuals with CAs. This analysis was performed in BioVU and utilized billing codes to identify 5,845 cases, individuals with at least one CA, and 50,059 controls of genetically European ancestry. Using Plink software we analyzed 5,398 SNPs in 292 ADME genes across cases and controls. Results from this analysis drove us to further investigate the association between CA risk and SLC22A1-3. Next, we performed PrediXcan analyses to estimate the association between genetically predicted gene expression (GPGE) of SLC22A1-3 genes across all available tissues in the GTEx resource and CA risk. RESULTS/ANTICIPATED RESULTS: The ADME GWAS identified multiple variants on chromosome 6 in the region of SCL22A1-3 that were associated with the risk for CAs. The most significant variants were rs2048327, rs2292334, rs3088442, rs1810126, rs376563, and rs7758229, p DISCUSSION/SIGNIFICANCE: The combination of the known crucial pharmacological roles of OCT1-3 and the results of our ADME GWAS / PrediXcan analyses demonstrates that PGx burden, specifically variation in the SLC22A1-3 genes, influences the risk of developing CAs. This new understanding has the potential to personalize care for pregnant individuals to reduce the risk of CAs.
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spelling pubmed-101297022023-04-26 285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies Brokamp, Elly Shuey, Megan Miller-Flemming, Tyne Cox, Nancy J. J Clin Transl Sci Precision Medicine/Health OBJECTIVES/GOALS: Congenital anomalies (CA) are common, but the cause is often unknown. The interplay between known environmental teratogens, such as medication use in pregnancy, and genetic predisposition impacts CA risk, but such interactions are poorly understood. We test the hypothesis that pharmacogenomic (PGx) variation impacts CA risk. METHODS/STUDY POPULATION: We performed a drug absorption, distribution, metabolism, and excretion (ADME) gene-wide association study (GWAS), which tests for a possible association between ADME gene single nucleotide polymorphisms and individuals with CAs. This analysis was performed in BioVU and utilized billing codes to identify 5,845 cases, individuals with at least one CA, and 50,059 controls of genetically European ancestry. Using Plink software we analyzed 5,398 SNPs in 292 ADME genes across cases and controls. Results from this analysis drove us to further investigate the association between CA risk and SLC22A1-3. Next, we performed PrediXcan analyses to estimate the association between genetically predicted gene expression (GPGE) of SLC22A1-3 genes across all available tissues in the GTEx resource and CA risk. RESULTS/ANTICIPATED RESULTS: The ADME GWAS identified multiple variants on chromosome 6 in the region of SCL22A1-3 that were associated with the risk for CAs. The most significant variants were rs2048327, rs2292334, rs3088442, rs1810126, rs376563, and rs7758229, p DISCUSSION/SIGNIFICANCE: The combination of the known crucial pharmacological roles of OCT1-3 and the results of our ADME GWAS / PrediXcan analyses demonstrates that PGx burden, specifically variation in the SLC22A1-3 genes, influences the risk of developing CAs. This new understanding has the potential to personalize care for pregnant individuals to reduce the risk of CAs. Cambridge University Press 2023-04-24 /pmc/articles/PMC10129702/ http://dx.doi.org/10.1017/cts.2023.341 Text en © The Association for Clinical and Translational Science 2023 https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is unaltered and is properly cited. The written permission of Cambridge University Press must be obtained for commercial re-use or in order to create a derivative work.
spellingShingle Precision Medicine/Health
Brokamp, Elly
Shuey, Megan
Miller-Flemming, Tyne
Cox, Nancy J.
285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies
title 285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies
title_full 285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies
title_fullStr 285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies
title_full_unstemmed 285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies
title_short 285 Genetic Variation in the SLC22A1-3 Genes Influence the Risk of Congenital Anomalies
title_sort 285 genetic variation in the slc22a1-3 genes influence the risk of congenital anomalies
topic Precision Medicine/Health
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10129702/
http://dx.doi.org/10.1017/cts.2023.341
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