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Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals
We present a code modularization approach to design efficient and massively parallel cubic- and linear-scaling solvers for electronic structure calculations using atomic orbitals. The modular implementation of the orbital minimization method, in which linear algebra and parallelization issues are ha...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10130719/ https://www.ncbi.nlm.nih.gov/pubmed/37122948 http://dx.doi.org/10.1098/rsos.230063 |
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author | Lebedeva, Irina V. García, Alberto Artacho, Emilio Ordejón, Pablo |
author_facet | Lebedeva, Irina V. García, Alberto Artacho, Emilio Ordejón, Pablo |
author_sort | Lebedeva, Irina V. |
collection | PubMed |
description | We present a code modularization approach to design efficient and massively parallel cubic- and linear-scaling solvers for electronic structure calculations using atomic orbitals. The modular implementation of the orbital minimization method, in which linear algebra and parallelization issues are handled via external libraries, is demonstrated in the SIESTA code. The distributed block compressed sparse row (DBCSR) and scalable linear algebra package (ScaLAPACK) libraries are used for algebraic operations with sparse and dense matrices, respectively. The MatrixSwitch and libOMM libraries, recently developed within the Electronic Structure Library, facilitate switching between different matrix formats and implement the energy minimization. We show results comparing the performance of several cubic-scaling algorithms, and also demonstrate the parallel performance of the linear-scaling solvers, and their supremacy over the cubic-scaling solvers for insulating systems with sizes of several hundreds of atoms. |
format | Online Article Text |
id | pubmed-10130719 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-101307192023-04-27 Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals Lebedeva, Irina V. García, Alberto Artacho, Emilio Ordejón, Pablo R Soc Open Sci Physics and Biophysics We present a code modularization approach to design efficient and massively parallel cubic- and linear-scaling solvers for electronic structure calculations using atomic orbitals. The modular implementation of the orbital minimization method, in which linear algebra and parallelization issues are handled via external libraries, is demonstrated in the SIESTA code. The distributed block compressed sparse row (DBCSR) and scalable linear algebra package (ScaLAPACK) libraries are used for algebraic operations with sparse and dense matrices, respectively. The MatrixSwitch and libOMM libraries, recently developed within the Electronic Structure Library, facilitate switching between different matrix formats and implement the energy minimization. We show results comparing the performance of several cubic-scaling algorithms, and also demonstrate the parallel performance of the linear-scaling solvers, and their supremacy over the cubic-scaling solvers for insulating systems with sizes of several hundreds of atoms. The Royal Society 2023-04-26 /pmc/articles/PMC10130719/ /pubmed/37122948 http://dx.doi.org/10.1098/rsos.230063 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Physics and Biophysics Lebedeva, Irina V. García, Alberto Artacho, Emilio Ordejón, Pablo Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
title | Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
title_full | Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
title_fullStr | Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
title_full_unstemmed | Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
title_short | Modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
title_sort | modular implementation of the linear- and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals |
topic | Physics and Biophysics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10130719/ https://www.ncbi.nlm.nih.gov/pubmed/37122948 http://dx.doi.org/10.1098/rsos.230063 |
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