Cargando…

WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions

[Image: see text] This paper introduces WhereWulff, a semiautonomous workflow for modeling the reactivity of catalyst surfaces. The workflow begins with a bulk optimization task that takes an initial bulk structure and returns the optimized bulk geometry and magnetic state, including stability under...

Descripción completa

Detalles Bibliográficos
Autores principales: Sanspeur, Rohan Yuri, Heras-Domingo, Javier, Kitchin, John R., Ulissi, Zachary
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10131224/
https://www.ncbi.nlm.nih.gov/pubmed/37017312
http://dx.doi.org/10.1021/acs.jcim.3c00142
_version_ 1785031131882586112
author Sanspeur, Rohan Yuri
Heras-Domingo, Javier
Kitchin, John R.
Ulissi, Zachary
author_facet Sanspeur, Rohan Yuri
Heras-Domingo, Javier
Kitchin, John R.
Ulissi, Zachary
author_sort Sanspeur, Rohan Yuri
collection PubMed
description [Image: see text] This paper introduces WhereWulff, a semiautonomous workflow for modeling the reactivity of catalyst surfaces. The workflow begins with a bulk optimization task that takes an initial bulk structure and returns the optimized bulk geometry and magnetic state, including stability under reaction conditions. The stable bulk structure is the input to a surface chemistry task that enumerates surfaces up to a user-specified maximum Miller index, computes relaxed surface energies for those surfaces, and then prioritizes those for subsequent adsorption energy calculations based on their contribution to the Wulff construction shape. The workflow handles computational resource constraints such as limited wall-time as well as automated job submission and analysis. We illustrate the workflow for oxygen evolution reaction (OER) intermediates on two double perovskites. WhereWulff nearly halved the number of Density Functional Theory (DFT) calculations from ∼240 to ∼132 by prioritizing terminations, up to a maximum Miller index of 1, based on surface stability. Additionally, it automatically handled the 180 additional resubmission jobs required to successfully converge 120+ atoms systems under a 48-h wall-time cluster constraint. There are four main use cases that we envision for WhereWulff: (1) as a first-principles source of truth to validate and update a closed-loop self-sustaining materials discovery pipeline, (2) as a data generation tool, (3) as an educational tool, allowing users (e.g., experimentalists) unfamiliar with OER modeling to probe materials they might be interested in before doing further in-domain analyses, (4) and finally, as a starting point for users to extend with reactions other than the OER, as part of a collaborative software community.
format Online
Article
Text
id pubmed-10131224
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-101312242023-04-27 WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions Sanspeur, Rohan Yuri Heras-Domingo, Javier Kitchin, John R. Ulissi, Zachary J Chem Inf Model [Image: see text] This paper introduces WhereWulff, a semiautonomous workflow for modeling the reactivity of catalyst surfaces. The workflow begins with a bulk optimization task that takes an initial bulk structure and returns the optimized bulk geometry and magnetic state, including stability under reaction conditions. The stable bulk structure is the input to a surface chemistry task that enumerates surfaces up to a user-specified maximum Miller index, computes relaxed surface energies for those surfaces, and then prioritizes those for subsequent adsorption energy calculations based on their contribution to the Wulff construction shape. The workflow handles computational resource constraints such as limited wall-time as well as automated job submission and analysis. We illustrate the workflow for oxygen evolution reaction (OER) intermediates on two double perovskites. WhereWulff nearly halved the number of Density Functional Theory (DFT) calculations from ∼240 to ∼132 by prioritizing terminations, up to a maximum Miller index of 1, based on surface stability. Additionally, it automatically handled the 180 additional resubmission jobs required to successfully converge 120+ atoms systems under a 48-h wall-time cluster constraint. There are four main use cases that we envision for WhereWulff: (1) as a first-principles source of truth to validate and update a closed-loop self-sustaining materials discovery pipeline, (2) as a data generation tool, (3) as an educational tool, allowing users (e.g., experimentalists) unfamiliar with OER modeling to probe materials they might be interested in before doing further in-domain analyses, (4) and finally, as a starting point for users to extend with reactions other than the OER, as part of a collaborative software community. American Chemical Society 2023-04-05 /pmc/articles/PMC10131224/ /pubmed/37017312 http://dx.doi.org/10.1021/acs.jcim.3c00142 Text en © 2023 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Sanspeur, Rohan Yuri
Heras-Domingo, Javier
Kitchin, John R.
Ulissi, Zachary
WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions
title WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions
title_full WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions
title_fullStr WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions
title_full_unstemmed WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions
title_short WhereWulff: A Semiautonomous Workflow for Systematic Catalyst Surface Reactivity under Reaction Conditions
title_sort wherewulff: a semiautonomous workflow for systematic catalyst surface reactivity under reaction conditions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10131224/
https://www.ncbi.nlm.nih.gov/pubmed/37017312
http://dx.doi.org/10.1021/acs.jcim.3c00142
work_keys_str_mv AT sanspeurrohanyuri wherewulffasemiautonomousworkflowforsystematiccatalystsurfacereactivityunderreactionconditions
AT herasdomingojavier wherewulffasemiautonomousworkflowforsystematiccatalystsurfacereactivityunderreactionconditions
AT kitchinjohnr wherewulffasemiautonomousworkflowforsystematiccatalystsurfacereactivityunderreactionconditions
AT ulissizachary wherewulffasemiautonomousworkflowforsystematiccatalystsurfacereactivityunderreactionconditions