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Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study

BACKGROUND: Sepsis is a leading cause of death in patients with trauma, and the risk of mortality increases significantly for each hour of delay in treatment. A hypermetabolic baseline and explosive inflammatory immune response mask clinical signs and symptoms of sepsis in trauma patients, making ea...

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Autores principales: Li, Jiang, Xi, Fengchan, Yu, Wenkui, Sun, Chuanrui, Wang, Xiling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10131736/
https://www.ncbi.nlm.nih.gov/pubmed/37000488
http://dx.doi.org/10.2196/42452
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author Li, Jiang
Xi, Fengchan
Yu, Wenkui
Sun, Chuanrui
Wang, Xiling
author_facet Li, Jiang
Xi, Fengchan
Yu, Wenkui
Sun, Chuanrui
Wang, Xiling
author_sort Li, Jiang
collection PubMed
description BACKGROUND: Sepsis is a leading cause of death in patients with trauma, and the risk of mortality increases significantly for each hour of delay in treatment. A hypermetabolic baseline and explosive inflammatory immune response mask clinical signs and symptoms of sepsis in trauma patients, making early diagnosis of sepsis more challenging. Machine learning–based predictive modeling has shown great promise in evaluating and predicting sepsis risk in the general intensive care unit (ICU) setting, but there has been no sepsis prediction model specifically developed for trauma patients so far. OBJECTIVE: To develop a machine learning model to predict the risk of sepsis at an hourly scale among ICU-admitted trauma patients. METHODS: We extracted data from adult trauma patients admitted to the ICU at Beth Israel Deaconess Medical Center between 2008 and 2019. A total of 42 raw variables were collected, including demographics, vital signs, arterial blood gas, and laboratory tests. We further derived a total of 485 features, including measurement pattern features, scoring features, and time-series variables, from the raw variables by feature engineering. The data set was randomly split into 70% for model development with stratified 5-fold cross-validation, 15% for calibration, and 15% for testing. An Extreme Gradient Boosting (XGBoost) model was developed to predict the hourly risk of sepsis at prediction windows of 4, 6, 8, 12, and 24 hours. We evaluated model performance for discrimination and calibration both at time-step and outcome levels. Clinical applicability of the model was evaluated with varying levels of precision, and the potential clinical net benefit was assessed with decision curve analysis (DCA). A Shapley additive explanation algorithm was applied to show the effect of features on the prediction model. In addition, we trained an L2-regularized logistic regression model to compare its performance with XGBoost. RESULTS: We included 4603 trauma patients in the study, 1196 (26%) of whom developed sepsis. The XGBoost model achieved an area under the receiver operating characteristics curve (AUROC) ranging from 0.83 to 0.88 at the 4-to-24-hour prediction window in the test set. With a ratio of 9 false alerts for every true alert, it predicted 73% (386/529) of sepsis-positive timesteps and 91% (163/179) of sepsis events in the subsequent 6 hours. The DCA showed our model had a positive net benefit in the threshold probability range of 0 to 0.6. In comparison, the logistic regression model achieved lower performance, with AUROC ranging from 0.76 to 0.84 at the 4-to-24-hour prediction window. CONCLUSIONS: The machine learning–based model had good discrimination and calibration performance for sepsis prediction in critical trauma patients. Using the model in clinical practice might help to identify patients at risk of sepsis in a time window that enables personalized intervention and early treatment.
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spelling pubmed-101317362023-04-27 Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study Li, Jiang Xi, Fengchan Yu, Wenkui Sun, Chuanrui Wang, Xiling JMIR Form Res Original Paper BACKGROUND: Sepsis is a leading cause of death in patients with trauma, and the risk of mortality increases significantly for each hour of delay in treatment. A hypermetabolic baseline and explosive inflammatory immune response mask clinical signs and symptoms of sepsis in trauma patients, making early diagnosis of sepsis more challenging. Machine learning–based predictive modeling has shown great promise in evaluating and predicting sepsis risk in the general intensive care unit (ICU) setting, but there has been no sepsis prediction model specifically developed for trauma patients so far. OBJECTIVE: To develop a machine learning model to predict the risk of sepsis at an hourly scale among ICU-admitted trauma patients. METHODS: We extracted data from adult trauma patients admitted to the ICU at Beth Israel Deaconess Medical Center between 2008 and 2019. A total of 42 raw variables were collected, including demographics, vital signs, arterial blood gas, and laboratory tests. We further derived a total of 485 features, including measurement pattern features, scoring features, and time-series variables, from the raw variables by feature engineering. The data set was randomly split into 70% for model development with stratified 5-fold cross-validation, 15% for calibration, and 15% for testing. An Extreme Gradient Boosting (XGBoost) model was developed to predict the hourly risk of sepsis at prediction windows of 4, 6, 8, 12, and 24 hours. We evaluated model performance for discrimination and calibration both at time-step and outcome levels. Clinical applicability of the model was evaluated with varying levels of precision, and the potential clinical net benefit was assessed with decision curve analysis (DCA). A Shapley additive explanation algorithm was applied to show the effect of features on the prediction model. In addition, we trained an L2-regularized logistic regression model to compare its performance with XGBoost. RESULTS: We included 4603 trauma patients in the study, 1196 (26%) of whom developed sepsis. The XGBoost model achieved an area under the receiver operating characteristics curve (AUROC) ranging from 0.83 to 0.88 at the 4-to-24-hour prediction window in the test set. With a ratio of 9 false alerts for every true alert, it predicted 73% (386/529) of sepsis-positive timesteps and 91% (163/179) of sepsis events in the subsequent 6 hours. The DCA showed our model had a positive net benefit in the threshold probability range of 0 to 0.6. In comparison, the logistic regression model achieved lower performance, with AUROC ranging from 0.76 to 0.84 at the 4-to-24-hour prediction window. CONCLUSIONS: The machine learning–based model had good discrimination and calibration performance for sepsis prediction in critical trauma patients. Using the model in clinical practice might help to identify patients at risk of sepsis in a time window that enables personalized intervention and early treatment. JMIR Publications 2023-03-31 /pmc/articles/PMC10131736/ /pubmed/37000488 http://dx.doi.org/10.2196/42452 Text en ©Jiang Li, Fengchan Xi, Wenkui Yu, Chuanrui Sun, Xiling Wang. Originally published in JMIR Formative Research (https://formative.jmir.org), 31.03.2023. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Formative Research, is properly cited. The complete bibliographic information, a link to the original publication on https://formative.jmir.org, as well as this copyright and license information must be included.
spellingShingle Original Paper
Li, Jiang
Xi, Fengchan
Yu, Wenkui
Sun, Chuanrui
Wang, Xiling
Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study
title Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study
title_full Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study
title_fullStr Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study
title_full_unstemmed Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study
title_short Real-Time Prediction of Sepsis in Critical Trauma Patients: Machine Learning–Based Modeling Study
title_sort real-time prediction of sepsis in critical trauma patients: machine learning–based modeling study
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10131736/
https://www.ncbi.nlm.nih.gov/pubmed/37000488
http://dx.doi.org/10.2196/42452
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