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Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae
The marine bacterial family Oceanospirillaceae, is well-known for its ability to degrade hydrocarbons and for its close association with algal blooms. However, only a few Oceanospirillaceae-infecting phages have been reported thus far. Here, we report on a novel Oceanospirillum phage, namely, vB_Osa...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Microbiology
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132091/ https://www.ncbi.nlm.nih.gov/pubmed/36975807 http://dx.doi.org/10.1128/aem.01896-22 |
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author | Zhang, Wenjing Liu, Yundan Zheng, Kaiyang Xing, Jinyan Li, Qian Gu, Chengxiang Wang, Ziyue Shao, Hongbing Guo, Cui He, Hui Wang, Hualong Sung, Yeong Yik Mok, Wen Jye Wong, Li Lian Liang, Yantao McMinn, Andrew Wang, Min |
author_facet | Zhang, Wenjing Liu, Yundan Zheng, Kaiyang Xing, Jinyan Li, Qian Gu, Chengxiang Wang, Ziyue Shao, Hongbing Guo, Cui He, Hui Wang, Hualong Sung, Yeong Yik Mok, Wen Jye Wong, Li Lian Liang, Yantao McMinn, Andrew Wang, Min |
author_sort | Zhang, Wenjing |
collection | PubMed |
description | The marine bacterial family Oceanospirillaceae, is well-known for its ability to degrade hydrocarbons and for its close association with algal blooms. However, only a few Oceanospirillaceae-infecting phages have been reported thus far. Here, we report on a novel Oceanospirillum phage, namely, vB_OsaM_PD0307, which has a 44,421 bp linear dsDNA genome and is the first myovirus infecting Oceanospirillaceae. A genomic analysis demonstrated that vB_OsaM_PD0307 is a variant of current phage isolates from the NCBI data set but that it has similar genomic features to two high-quality, uncultured viral genomes identified from marine metagenomes. Hence, we propose that vB_OsaM_PD0307 can be classified as the type phage of a new genus, designated Oceanospimyovirus. Additionally, metagenomic read mapping results have further shown that Oceanospimyovirus species are widespread in the global ocean, display distinct biogeographic distributions, and are abundant in polar regions. In summary, our findings expand the current understanding of the genomic characteristics, phylogenetic diversity, and distribution of Oceanospimyovirus phages. IMPORTANCE Oceanospirillum phage vB_OsaM_PD0307 is the first myovirus found to infect Oceanospirillaceae, and it represents a novel abundant viral genus in polar regions. This study provides insights into the genomic, phylogenetic, and ecological characteristics of the new viral genus, namely Oceanospimyovirus. |
format | Online Article Text |
id | pubmed-10132091 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Society for Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-101320912023-04-27 Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae Zhang, Wenjing Liu, Yundan Zheng, Kaiyang Xing, Jinyan Li, Qian Gu, Chengxiang Wang, Ziyue Shao, Hongbing Guo, Cui He, Hui Wang, Hualong Sung, Yeong Yik Mok, Wen Jye Wong, Li Lian Liang, Yantao McMinn, Andrew Wang, Min Appl Environ Microbiol Microbial Ecology The marine bacterial family Oceanospirillaceae, is well-known for its ability to degrade hydrocarbons and for its close association with algal blooms. However, only a few Oceanospirillaceae-infecting phages have been reported thus far. Here, we report on a novel Oceanospirillum phage, namely, vB_OsaM_PD0307, which has a 44,421 bp linear dsDNA genome and is the first myovirus infecting Oceanospirillaceae. A genomic analysis demonstrated that vB_OsaM_PD0307 is a variant of current phage isolates from the NCBI data set but that it has similar genomic features to two high-quality, uncultured viral genomes identified from marine metagenomes. Hence, we propose that vB_OsaM_PD0307 can be classified as the type phage of a new genus, designated Oceanospimyovirus. Additionally, metagenomic read mapping results have further shown that Oceanospimyovirus species are widespread in the global ocean, display distinct biogeographic distributions, and are abundant in polar regions. In summary, our findings expand the current understanding of the genomic characteristics, phylogenetic diversity, and distribution of Oceanospimyovirus phages. IMPORTANCE Oceanospirillum phage vB_OsaM_PD0307 is the first myovirus found to infect Oceanospirillaceae, and it represents a novel abundant viral genus in polar regions. This study provides insights into the genomic, phylogenetic, and ecological characteristics of the new viral genus, namely Oceanospimyovirus. American Society for Microbiology 2023-03-28 /pmc/articles/PMC10132091/ /pubmed/36975807 http://dx.doi.org/10.1128/aem.01896-22 Text en Copyright © 2023 Zhang et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Microbial Ecology Zhang, Wenjing Liu, Yundan Zheng, Kaiyang Xing, Jinyan Li, Qian Gu, Chengxiang Wang, Ziyue Shao, Hongbing Guo, Cui He, Hui Wang, Hualong Sung, Yeong Yik Mok, Wen Jye Wong, Li Lian Liang, Yantao McMinn, Andrew Wang, Min Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae |
title | Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae |
title_full | Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae |
title_fullStr | Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae |
title_full_unstemmed | Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae |
title_short | Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against Oceanospirillaceae |
title_sort | discovery of an abundant viral genus in polar regions through the isolation and genomic characterization of a new virus against oceanospirillaceae |
topic | Microbial Ecology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132091/ https://www.ncbi.nlm.nih.gov/pubmed/36975807 http://dx.doi.org/10.1128/aem.01896-22 |
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