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The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species

Quercus kerrii Craib 1911 (section Cyclobalanopsis) is a widespread tree species in the tropical seasonal forests of southwest China and Northern Indo-China areas. In this study, we sequenced, assembled and annotated the complete chloroplast genome of Q. kerrii. The circular genome was 160,743 bp in...

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Autores principales: Ouyang, Ze-Yi, Li, Zhi-Hui, Chen, Ran, Jiang, Xiao-Long, Wu, Ji-You
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132218/
https://www.ncbi.nlm.nih.gov/pubmed/37124995
http://dx.doi.org/10.1080/23802359.2023.2204167
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author Ouyang, Ze-Yi
Li, Zhi-Hui
Chen, Ran
Jiang, Xiao-Long
Wu, Ji-You
author_facet Ouyang, Ze-Yi
Li, Zhi-Hui
Chen, Ran
Jiang, Xiao-Long
Wu, Ji-You
author_sort Ouyang, Ze-Yi
collection PubMed
description Quercus kerrii Craib 1911 (section Cyclobalanopsis) is a widespread tree species in the tropical seasonal forests of southwest China and Northern Indo-China areas. In this study, we sequenced, assembled and annotated the complete chloroplast genome of Q. kerrii. The circular genome was 160,743 bp in length and had a GC content of 36.89%. The Q. kerrii chloroplast genome has a typical quadripartite structure, including two inverted repeat regions (length, 25,825 bp; GC content, 42.76%), a large single-copy region (length, 90,196 bp; GC content, 34.74%), and a small single-copy region (length, 18,897 bp; GC content, 30.60%). Genome annotation has indicated that the Q. kerrii chloroplast genome contained 131 genes, including 86 protein-coding genes, 37 tRNA, and eight rRNA. The phylogenetic tree showed that Q. kerrii had a close relationship with Q. schottkyana Rehder & E.H.Wilson 1916.
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spelling pubmed-101322182023-04-27 The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species Ouyang, Ze-Yi Li, Zhi-Hui Chen, Ran Jiang, Xiao-Long Wu, Ji-You Mitochondrial DNA B Resour Plastome Announcement Quercus kerrii Craib 1911 (section Cyclobalanopsis) is a widespread tree species in the tropical seasonal forests of southwest China and Northern Indo-China areas. In this study, we sequenced, assembled and annotated the complete chloroplast genome of Q. kerrii. The circular genome was 160,743 bp in length and had a GC content of 36.89%. The Q. kerrii chloroplast genome has a typical quadripartite structure, including two inverted repeat regions (length, 25,825 bp; GC content, 42.76%), a large single-copy region (length, 90,196 bp; GC content, 34.74%), and a small single-copy region (length, 18,897 bp; GC content, 30.60%). Genome annotation has indicated that the Q. kerrii chloroplast genome contained 131 genes, including 86 protein-coding genes, 37 tRNA, and eight rRNA. The phylogenetic tree showed that Q. kerrii had a close relationship with Q. schottkyana Rehder & E.H.Wilson 1916. Taylor & Francis 2023-04-24 /pmc/articles/PMC10132218/ /pubmed/37124995 http://dx.doi.org/10.1080/23802359.2023.2204167 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Announcement
Ouyang, Ze-Yi
Li, Zhi-Hui
Chen, Ran
Jiang, Xiao-Long
Wu, Ji-You
The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species
title The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species
title_full The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species
title_fullStr The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species
title_full_unstemmed The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species
title_short The complete chloroplast genome sequence of Quercus kerrii (Fagaceae), and comparative analysis with related species
title_sort complete chloroplast genome sequence of quercus kerrii (fagaceae), and comparative analysis with related species
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132218/
https://www.ncbi.nlm.nih.gov/pubmed/37124995
http://dx.doi.org/10.1080/23802359.2023.2204167
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