The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant

Cuphea hookeriana Walp. is an ornamental plant belonging to the Lythraceae. In this study, we reported the complete chloroplast (cp) genome sequence here and analyzed the phylogenetic relationship among Lythraceae plants. The length of the cp genome was 158,999 bp, including a large single-copy (LSC...

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Autores principales: Gu, Cuihua, Ye, Yacheng, Zhang, Guozhe, Yu, Mengxin, Bai, Mingzhu, Ma, Qingqing, Shao, Weili, Zhao, Yu, Hong, Sidan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
MitoGenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132219/
https://www.ncbi.nlm.nih.gov/pubmed/37124996
http://dx.doi.org/10.1080/23802359.2023.2203783
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author Gu, Cuihua
Ye, Yacheng
Zhang, Guozhe
Yu, Mengxin
Bai, Mingzhu
Ma, Qingqing
Shao, Weili
Zhao, Yu
Hong, Sidan
author_facet Gu, Cuihua
Ye, Yacheng
Zhang, Guozhe
Yu, Mengxin
Bai, Mingzhu
Ma, Qingqing
Shao, Weili
Zhao, Yu
Hong, Sidan
author_sort Gu, Cuihua
collection PubMed
description Cuphea hookeriana Walp. is an ornamental plant belonging to the Lythraceae. In this study, we reported the complete chloroplast (cp) genome sequence here and analyzed the phylogenetic relationship among Lythraceae plants. The length of the cp genome was 158,999 bp, including a large single-copy (LSC, 89,311 bp) region and a small single-copy (SSC, 18,436 bp) region separated by a pair of inverted repeats (IRs, 25,626 bp). There were 72 unique protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes in the cp genome of C. hookeriana. A total of 223 simple sequence repeats (SSRs) and 34 long repeat sequences were identified. Phylogenetic analyses using maximum-likelihood (ML) revealed that C. hookeriana was close to C. hyssopifolia. In addition, the two Cuphea species were the sister group of Woodfordia fruticosa.
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spelling pubmed-101322192023-04-27 The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant Gu, Cuihua Ye, Yacheng Zhang, Guozhe Yu, Mengxin Bai, Mingzhu Ma, Qingqing Shao, Weili Zhao, Yu Hong, Sidan Mitochondrial DNA B Resour MitoGenome Announcement Cuphea hookeriana Walp. is an ornamental plant belonging to the Lythraceae. In this study, we reported the complete chloroplast (cp) genome sequence here and analyzed the phylogenetic relationship among Lythraceae plants. The length of the cp genome was 158,999 bp, including a large single-copy (LSC, 89,311 bp) region and a small single-copy (SSC, 18,436 bp) region separated by a pair of inverted repeats (IRs, 25,626 bp). There were 72 unique protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes in the cp genome of C. hookeriana. A total of 223 simple sequence repeats (SSRs) and 34 long repeat sequences were identified. Phylogenetic analyses using maximum-likelihood (ML) revealed that C. hookeriana was close to C. hyssopifolia. In addition, the two Cuphea species were the sister group of Woodfordia fruticosa. Taylor & Francis 2023-04-24 /pmc/articles/PMC10132219/ /pubmed/37124996 http://dx.doi.org/10.1080/23802359.2023.2203783 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle MitoGenome Announcement
Gu, Cuihua
Ye, Yacheng
Zhang, Guozhe
Yu, Mengxin
Bai, Mingzhu
Ma, Qingqing
Shao, Weili
Zhao, Yu
Hong, Sidan
The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant
title The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant
title_full The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant
title_fullStr The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant
title_full_unstemmed The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant
title_short The chloroplast genome of Cuphea hookeriana Walp. (Lythraceae), a Mexico ornamental plant
title_sort chloroplast genome of cuphea hookeriana walp. (lythraceae), a mexico ornamental plant
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132219/
https://www.ncbi.nlm.nih.gov/pubmed/37124996
http://dx.doi.org/10.1080/23802359.2023.2203783
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