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Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board

Recent advances in electronics and microfluidics have enabled several research groups to develop fully integrated, sample-to-result isothermal nucleic acid amplification test (NAAT) platforms for the point of care. However, high component counts and costs have limited translation of these platforms...

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Autores principales: Shah, Kamal G., Roller, Mike, Kumar, Sujatha, Bennett, Steven, Heiniger, Erin, Looney, Katriel, Buser, Joshua, Bishop, Joshua D., Yager, Paul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132542/
https://www.ncbi.nlm.nih.gov/pubmed/37099532
http://dx.doi.org/10.1371/journal.pone.0284424
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author Shah, Kamal G.
Roller, Mike
Kumar, Sujatha
Bennett, Steven
Heiniger, Erin
Looney, Katriel
Buser, Joshua
Bishop, Joshua D.
Yager, Paul
author_facet Shah, Kamal G.
Roller, Mike
Kumar, Sujatha
Bennett, Steven
Heiniger, Erin
Looney, Katriel
Buser, Joshua
Bishop, Joshua D.
Yager, Paul
author_sort Shah, Kamal G.
collection PubMed
description Recent advances in electronics and microfluidics have enabled several research groups to develop fully integrated, sample-to-result isothermal nucleic acid amplification test (NAAT) platforms for the point of care. However, high component counts and costs have limited translation of these platforms beyond the clinic to low-resource settings—including homes. Many NAATs include complex, multi-component heater electronics based on flex circuits or multiple printed circuit boards (PCBs) to support essential NAAT steps such as lysis, sample deactivation, and nucleic acid amplification. In contrast, current commercial assays for home use, such as those for pregnancy or ovulation that include electronics, typically have just one onboard PCB. This work describes a generalizable strategy to integrate all heaters and the electronics needed to control them onto a single low-cost, USB-powered PCB. We built a multiplexable disposable NAAT (“MD NAAT”) platform that applies these principles, integrating small-area heaters that heat small regions to near-boiling (for pathogen lysis and deactivation) and large-area heaters (for amplification) on the same PCB. We show that both classes of heaters have high intra-board and inter-device reproducibility despite only heating a NAAT cartridge from below. We validated the small-area heaters by lysing methicillin-resistant Staphylococcus aureus (MRSA) cells and the large-area heaters by performing two types of isothermal NAATs (isothermal strand displacement amplification (iSDA) and loop-mediated isothermal amplification (LAMP)). These results demonstrate the merit of integrating NAAT heaters and control electronics onto a single printed circuit board and are a step toward translating NAATs to the home.
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spelling pubmed-101325422023-04-27 Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board Shah, Kamal G. Roller, Mike Kumar, Sujatha Bennett, Steven Heiniger, Erin Looney, Katriel Buser, Joshua Bishop, Joshua D. Yager, Paul PLoS One Research Article Recent advances in electronics and microfluidics have enabled several research groups to develop fully integrated, sample-to-result isothermal nucleic acid amplification test (NAAT) platforms for the point of care. However, high component counts and costs have limited translation of these platforms beyond the clinic to low-resource settings—including homes. Many NAATs include complex, multi-component heater electronics based on flex circuits or multiple printed circuit boards (PCBs) to support essential NAAT steps such as lysis, sample deactivation, and nucleic acid amplification. In contrast, current commercial assays for home use, such as those for pregnancy or ovulation that include electronics, typically have just one onboard PCB. This work describes a generalizable strategy to integrate all heaters and the electronics needed to control them onto a single low-cost, USB-powered PCB. We built a multiplexable disposable NAAT (“MD NAAT”) platform that applies these principles, integrating small-area heaters that heat small regions to near-boiling (for pathogen lysis and deactivation) and large-area heaters (for amplification) on the same PCB. We show that both classes of heaters have high intra-board and inter-device reproducibility despite only heating a NAAT cartridge from below. We validated the small-area heaters by lysing methicillin-resistant Staphylococcus aureus (MRSA) cells and the large-area heaters by performing two types of isothermal NAATs (isothermal strand displacement amplification (iSDA) and loop-mediated isothermal amplification (LAMP)). These results demonstrate the merit of integrating NAAT heaters and control electronics onto a single printed circuit board and are a step toward translating NAATs to the home. Public Library of Science 2023-04-26 /pmc/articles/PMC10132542/ /pubmed/37099532 http://dx.doi.org/10.1371/journal.pone.0284424 Text en © 2023 Shah et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Shah, Kamal G.
Roller, Mike
Kumar, Sujatha
Bennett, Steven
Heiniger, Erin
Looney, Katriel
Buser, Joshua
Bishop, Joshua D.
Yager, Paul
Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board
title Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board
title_full Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board
title_fullStr Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board
title_full_unstemmed Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board
title_short Disposable platform for bacterial lysis and nucleic acid amplification based on a single USB-powered printed circuit board
title_sort disposable platform for bacterial lysis and nucleic acid amplification based on a single usb-powered printed circuit board
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132542/
https://www.ncbi.nlm.nih.gov/pubmed/37099532
http://dx.doi.org/10.1371/journal.pone.0284424
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