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Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer

Introduction: Breast cancer is the most common form of cancer among women, it is critical to identify potential targets and prognostic biomarkers. Ferroptosis combined with immunity shows a pivotal role in a variety of tumors, which provides new opportunities to detect and treat breast cancer. Metho...

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Autores principales: Xie, Zhenlan, Li, Jialin, Liu, Chen, Zhao, Tie, Xing, Yixiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132627/
https://www.ncbi.nlm.nih.gov/pubmed/37124611
http://dx.doi.org/10.3389/fgene.2023.1173159
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author Xie, Zhenlan
Li, Jialin
Liu, Chen
Zhao, Tie
Xing, Yixiang
author_facet Xie, Zhenlan
Li, Jialin
Liu, Chen
Zhao, Tie
Xing, Yixiang
author_sort Xie, Zhenlan
collection PubMed
description Introduction: Breast cancer is the most common form of cancer among women, it is critical to identify potential targets and prognostic biomarkers. Ferroptosis combined with immunity shows a pivotal role in a variety of tumors, which provides new opportunities to detect and treat breast cancer. Methods: Our first step was to combine multiple datasets to search for immune ferroptosis-related mRNAs. In the next step, risk signatures were created using Least Absolute Shrinkage and Selection Operator (LASSO). After that, based on the results of the multivariate Cox analysis, we created a prognostic nomogram and validated the model’s accuracy. Finally, functional enrichment analysis, single sample gene set enrichment analysis (ssGSEA), immunity and drug sensitivity correlation analysis were performed to explore the possible mechanisms by which these immune ferroptosis associated mRNAs affect BRCA survival. Results: An immune ferroptosis signature (IFRSig) consisting of 5 mRNAs was constructed and showed excellent predictability in the training and validation cohorts. A correlation analysis revealed that clinical characteristics were closely related to risk characteristics. Our nomogram model, which we created by combining risk characteristics and clinical parameters, was proven to be accurate at predicting BRCA prognosis. Further, we divided patients into lowrisk and high-risk groups based on the expression of the model-related genes. Compared with low-risk group, high-risk group showed lower levels of immune cell infiltration, immune-related functions, and immune checkpoints molecules, which may associate with the poor prognosis. Discussion: The IFRSig could be used to predict overall survival (OS) and treatment response in BRCA patients and could be viewed as an independent prognostic factor. The findings in this study shed light on the role of immune ferroptosis in the progression of BRCA.
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spelling pubmed-101326272023-04-27 Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer Xie, Zhenlan Li, Jialin Liu, Chen Zhao, Tie Xing, Yixiang Front Genet Genetics Introduction: Breast cancer is the most common form of cancer among women, it is critical to identify potential targets and prognostic biomarkers. Ferroptosis combined with immunity shows a pivotal role in a variety of tumors, which provides new opportunities to detect and treat breast cancer. Methods: Our first step was to combine multiple datasets to search for immune ferroptosis-related mRNAs. In the next step, risk signatures were created using Least Absolute Shrinkage and Selection Operator (LASSO). After that, based on the results of the multivariate Cox analysis, we created a prognostic nomogram and validated the model’s accuracy. Finally, functional enrichment analysis, single sample gene set enrichment analysis (ssGSEA), immunity and drug sensitivity correlation analysis were performed to explore the possible mechanisms by which these immune ferroptosis associated mRNAs affect BRCA survival. Results: An immune ferroptosis signature (IFRSig) consisting of 5 mRNAs was constructed and showed excellent predictability in the training and validation cohorts. A correlation analysis revealed that clinical characteristics were closely related to risk characteristics. Our nomogram model, which we created by combining risk characteristics and clinical parameters, was proven to be accurate at predicting BRCA prognosis. Further, we divided patients into lowrisk and high-risk groups based on the expression of the model-related genes. Compared with low-risk group, high-risk group showed lower levels of immune cell infiltration, immune-related functions, and immune checkpoints molecules, which may associate with the poor prognosis. Discussion: The IFRSig could be used to predict overall survival (OS) and treatment response in BRCA patients and could be viewed as an independent prognostic factor. The findings in this study shed light on the role of immune ferroptosis in the progression of BRCA. Frontiers Media S.A. 2023-04-12 /pmc/articles/PMC10132627/ /pubmed/37124611 http://dx.doi.org/10.3389/fgene.2023.1173159 Text en Copyright © 2023 Xie, Li, Liu, Zhao and Xing. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Xie, Zhenlan
Li, Jialin
Liu, Chen
Zhao, Tie
Xing, Yixiang
Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
title Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
title_full Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
title_fullStr Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
title_full_unstemmed Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
title_short Identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
title_sort identification of novel immune ferroptosis-related genes associated with clinical and prognostic features in breast cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132627/
https://www.ncbi.nlm.nih.gov/pubmed/37124611
http://dx.doi.org/10.3389/fgene.2023.1173159
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