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The genetic determinants of recurrent somatic mutations in 43,693 blood genomes

Nononcogenic somatic mutations are thought to be uncommon and inconsequential. To test this, we analyzed 43,693 National Heart, Lung and Blood Institute Trans-Omics for Precision Medicine blood whole genomes from 37 cohorts and identified 7131 non-missense somatic mutations that are recurrently muta...

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Autores principales: Weinstock, Joshua S., Laurie, Cecelia A., Broome, Jai G., Taylor, Kent D., Guo, Xiuqing, Shuldiner, Alan R., O’Connell, Jeffrey R., Lewis, Joshua P., Boerwinkle, Eric, Barnes, Kathleen C., Chami, Nathalie, Kenny, Eimear E., Loos, Ruth J. F., Fornage, Myriam, Redline, Susan, Cade, Brian E., Gilliland, Frank D., Chen, Zhanghua, Gauderman, W. James, Kumar, Rajesh, Grammer, Leslie, Schleimer, Robert P., Psaty, Bruce M., Bis, Joshua C., Brody, Jennifer A., Silverman, Edwin K., Yun, Jeong H., Qiao, Dandi, Weiss, Scott T., Lasky-Su, Jessica, DeMeo, Dawn L., Palmer, Nicholette D., Freedman, Barry I., Bowden, Donald W., Cho, Michael H., Vasan, Ramachandran S., Johnson, Andrew D., Yanek, Lisa R., Becker, Lewis C., Kardia, Sharon, He, Jiang, Kaplan, Robert, Heckbert, Susan R., Smith, Nicholas L., Wiggins, Kerri L., Arnett, Donna K., Irvin, Marguerite R., Tiwari, Hemant, Correa, Adolfo, Raffield, Laura M., Gao, Yan, de Andrade, Mariza, Rotter, Jerome I., Rich, Stephen S., Manichaikul, Ani W., Konkle, Barbara A., Johnsen, Jill M., Wheeler, Marsha M., Custer, Brian S., Duggirala, Ravindranath, Curran, Joanne E., Blangero, John, Gui, Hongsheng, Xiao, Shujie, Williams, L. Keoki, Meyers, Deborah A., Li, Xingnan, Ortega, Victor, McGarvey, Stephen, Gu, C. Charles, Chen, Yii-Der Ida, Lee, Wen-Jane, Shoemaker, M. Benjamin, Darbar, Dawood, Roden, Dan, Albert, Christine, Kooperberg, Charles, Desai, Pinkal, Blackwell, Thomas W., Abecasis, Goncalo R., Smith, Albert V., Kang, Hyun M., Mathias, Rasika, Natarajan, Pradeep, Jaiswal, Siddhartha, Reiner, Alexander P., Bick, Alexander G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132750/
https://www.ncbi.nlm.nih.gov/pubmed/37126548
http://dx.doi.org/10.1126/sciadv.abm4945
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author Weinstock, Joshua S.
Laurie, Cecelia A.
Broome, Jai G.
Taylor, Kent D.
Guo, Xiuqing
Shuldiner, Alan R.
O’Connell, Jeffrey R.
Lewis, Joshua P.
Boerwinkle, Eric
Barnes, Kathleen C.
Chami, Nathalie
Kenny, Eimear E.
Loos, Ruth J. F.
Fornage, Myriam
Redline, Susan
Cade, Brian E.
Gilliland, Frank D.
Chen, Zhanghua
Gauderman, W. James
Kumar, Rajesh
Grammer, Leslie
Schleimer, Robert P.
Psaty, Bruce M.
Bis, Joshua C.
Brody, Jennifer A.
Silverman, Edwin K.
Yun, Jeong H.
Qiao, Dandi
Weiss, Scott T.
Lasky-Su, Jessica
DeMeo, Dawn L.
Palmer, Nicholette D.
Freedman, Barry I.
Bowden, Donald W.
Cho, Michael H.
Vasan, Ramachandran S.
Johnson, Andrew D.
Yanek, Lisa R.
Becker, Lewis C.
Kardia, Sharon
He, Jiang
Kaplan, Robert
Heckbert, Susan R.
Smith, Nicholas L.
Wiggins, Kerri L.
Arnett, Donna K.
Irvin, Marguerite R.
Tiwari, Hemant
Correa, Adolfo
Raffield, Laura M.
Gao, Yan
de Andrade, Mariza
Rotter, Jerome I.
Rich, Stephen S.
Manichaikul, Ani W.
Konkle, Barbara A.
Johnsen, Jill M.
Wheeler, Marsha M.
Custer, Brian S.
Duggirala, Ravindranath
Curran, Joanne E.
Blangero, John
Gui, Hongsheng
Xiao, Shujie
Williams, L. Keoki
Meyers, Deborah A.
Li, Xingnan
Ortega, Victor
McGarvey, Stephen
Gu, C. Charles
Chen, Yii-Der Ida
Lee, Wen-Jane
Shoemaker, M. Benjamin
Darbar, Dawood
Roden, Dan
Albert, Christine
Kooperberg, Charles
Desai, Pinkal
Blackwell, Thomas W.
Abecasis, Goncalo R.
Smith, Albert V.
Kang, Hyun M.
Mathias, Rasika
Natarajan, Pradeep
Jaiswal, Siddhartha
Reiner, Alexander P.
Bick, Alexander G.
author_facet Weinstock, Joshua S.
Laurie, Cecelia A.
Broome, Jai G.
Taylor, Kent D.
Guo, Xiuqing
Shuldiner, Alan R.
O’Connell, Jeffrey R.
Lewis, Joshua P.
Boerwinkle, Eric
Barnes, Kathleen C.
Chami, Nathalie
Kenny, Eimear E.
Loos, Ruth J. F.
Fornage, Myriam
Redline, Susan
Cade, Brian E.
Gilliland, Frank D.
Chen, Zhanghua
Gauderman, W. James
Kumar, Rajesh
Grammer, Leslie
Schleimer, Robert P.
Psaty, Bruce M.
Bis, Joshua C.
Brody, Jennifer A.
Silverman, Edwin K.
Yun, Jeong H.
Qiao, Dandi
Weiss, Scott T.
Lasky-Su, Jessica
DeMeo, Dawn L.
Palmer, Nicholette D.
Freedman, Barry I.
Bowden, Donald W.
Cho, Michael H.
Vasan, Ramachandran S.
Johnson, Andrew D.
Yanek, Lisa R.
Becker, Lewis C.
Kardia, Sharon
He, Jiang
Kaplan, Robert
Heckbert, Susan R.
Smith, Nicholas L.
Wiggins, Kerri L.
Arnett, Donna K.
Irvin, Marguerite R.
Tiwari, Hemant
Correa, Adolfo
Raffield, Laura M.
Gao, Yan
de Andrade, Mariza
Rotter, Jerome I.
Rich, Stephen S.
Manichaikul, Ani W.
Konkle, Barbara A.
Johnsen, Jill M.
Wheeler, Marsha M.
Custer, Brian S.
Duggirala, Ravindranath
Curran, Joanne E.
Blangero, John
Gui, Hongsheng
Xiao, Shujie
Williams, L. Keoki
Meyers, Deborah A.
Li, Xingnan
Ortega, Victor
McGarvey, Stephen
Gu, C. Charles
Chen, Yii-Der Ida
Lee, Wen-Jane
Shoemaker, M. Benjamin
Darbar, Dawood
Roden, Dan
Albert, Christine
Kooperberg, Charles
Desai, Pinkal
Blackwell, Thomas W.
Abecasis, Goncalo R.
Smith, Albert V.
Kang, Hyun M.
Mathias, Rasika
Natarajan, Pradeep
Jaiswal, Siddhartha
Reiner, Alexander P.
Bick, Alexander G.
author_sort Weinstock, Joshua S.
collection PubMed
description Nononcogenic somatic mutations are thought to be uncommon and inconsequential. To test this, we analyzed 43,693 National Heart, Lung and Blood Institute Trans-Omics for Precision Medicine blood whole genomes from 37 cohorts and identified 7131 non-missense somatic mutations that are recurrently mutated in at least 50 individuals. These recurrent non-missense somatic mutations (RNMSMs) are not clearly explained by other clonal phenomena such as clonal hematopoiesis. RNMSM prevalence increased with age, with an average 50-year-old having 27 RNMSMs. Inherited germline variation associated with RNMSM acquisition. These variants were found in genes involved in adaptive immune function, proinflammatory cytokine production, and lymphoid lineage commitment. In addition, the presence of eight specific RNMSMs associated with blood cell traits at effect sizes comparable to Mendelian genetic mutations. Overall, we found that somatic mutations in blood are an unexpectedly common phenomenon with ancestry-specific determinants and human health consequences.
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spelling pubmed-101327502023-04-27 The genetic determinants of recurrent somatic mutations in 43,693 blood genomes Weinstock, Joshua S. Laurie, Cecelia A. Broome, Jai G. Taylor, Kent D. Guo, Xiuqing Shuldiner, Alan R. O’Connell, Jeffrey R. Lewis, Joshua P. Boerwinkle, Eric Barnes, Kathleen C. Chami, Nathalie Kenny, Eimear E. Loos, Ruth J. F. Fornage, Myriam Redline, Susan Cade, Brian E. Gilliland, Frank D. Chen, Zhanghua Gauderman, W. James Kumar, Rajesh Grammer, Leslie Schleimer, Robert P. Psaty, Bruce M. Bis, Joshua C. Brody, Jennifer A. Silverman, Edwin K. Yun, Jeong H. Qiao, Dandi Weiss, Scott T. Lasky-Su, Jessica DeMeo, Dawn L. Palmer, Nicholette D. Freedman, Barry I. Bowden, Donald W. Cho, Michael H. Vasan, Ramachandran S. Johnson, Andrew D. Yanek, Lisa R. Becker, Lewis C. Kardia, Sharon He, Jiang Kaplan, Robert Heckbert, Susan R. Smith, Nicholas L. Wiggins, Kerri L. Arnett, Donna K. Irvin, Marguerite R. Tiwari, Hemant Correa, Adolfo Raffield, Laura M. Gao, Yan de Andrade, Mariza Rotter, Jerome I. Rich, Stephen S. Manichaikul, Ani W. Konkle, Barbara A. Johnsen, Jill M. Wheeler, Marsha M. Custer, Brian S. Duggirala, Ravindranath Curran, Joanne E. Blangero, John Gui, Hongsheng Xiao, Shujie Williams, L. Keoki Meyers, Deborah A. Li, Xingnan Ortega, Victor McGarvey, Stephen Gu, C. Charles Chen, Yii-Der Ida Lee, Wen-Jane Shoemaker, M. Benjamin Darbar, Dawood Roden, Dan Albert, Christine Kooperberg, Charles Desai, Pinkal Blackwell, Thomas W. Abecasis, Goncalo R. Smith, Albert V. Kang, Hyun M. Mathias, Rasika Natarajan, Pradeep Jaiswal, Siddhartha Reiner, Alexander P. Bick, Alexander G. Sci Adv Biomedicine and Life Sciences Nononcogenic somatic mutations are thought to be uncommon and inconsequential. To test this, we analyzed 43,693 National Heart, Lung and Blood Institute Trans-Omics for Precision Medicine blood whole genomes from 37 cohorts and identified 7131 non-missense somatic mutations that are recurrently mutated in at least 50 individuals. These recurrent non-missense somatic mutations (RNMSMs) are not clearly explained by other clonal phenomena such as clonal hematopoiesis. RNMSM prevalence increased with age, with an average 50-year-old having 27 RNMSMs. Inherited germline variation associated with RNMSM acquisition. These variants were found in genes involved in adaptive immune function, proinflammatory cytokine production, and lymphoid lineage commitment. In addition, the presence of eight specific RNMSMs associated with blood cell traits at effect sizes comparable to Mendelian genetic mutations. Overall, we found that somatic mutations in blood are an unexpectedly common phenomenon with ancestry-specific determinants and human health consequences. American Association for the Advancement of Science 2023-04-26 /pmc/articles/PMC10132750/ /pubmed/37126548 http://dx.doi.org/10.1126/sciadv.abm4945 Text en Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Biomedicine and Life Sciences
Weinstock, Joshua S.
Laurie, Cecelia A.
Broome, Jai G.
Taylor, Kent D.
Guo, Xiuqing
Shuldiner, Alan R.
O’Connell, Jeffrey R.
Lewis, Joshua P.
Boerwinkle, Eric
Barnes, Kathleen C.
Chami, Nathalie
Kenny, Eimear E.
Loos, Ruth J. F.
Fornage, Myriam
Redline, Susan
Cade, Brian E.
Gilliland, Frank D.
Chen, Zhanghua
Gauderman, W. James
Kumar, Rajesh
Grammer, Leslie
Schleimer, Robert P.
Psaty, Bruce M.
Bis, Joshua C.
Brody, Jennifer A.
Silverman, Edwin K.
Yun, Jeong H.
Qiao, Dandi
Weiss, Scott T.
Lasky-Su, Jessica
DeMeo, Dawn L.
Palmer, Nicholette D.
Freedman, Barry I.
Bowden, Donald W.
Cho, Michael H.
Vasan, Ramachandran S.
Johnson, Andrew D.
Yanek, Lisa R.
Becker, Lewis C.
Kardia, Sharon
He, Jiang
Kaplan, Robert
Heckbert, Susan R.
Smith, Nicholas L.
Wiggins, Kerri L.
Arnett, Donna K.
Irvin, Marguerite R.
Tiwari, Hemant
Correa, Adolfo
Raffield, Laura M.
Gao, Yan
de Andrade, Mariza
Rotter, Jerome I.
Rich, Stephen S.
Manichaikul, Ani W.
Konkle, Barbara A.
Johnsen, Jill M.
Wheeler, Marsha M.
Custer, Brian S.
Duggirala, Ravindranath
Curran, Joanne E.
Blangero, John
Gui, Hongsheng
Xiao, Shujie
Williams, L. Keoki
Meyers, Deborah A.
Li, Xingnan
Ortega, Victor
McGarvey, Stephen
Gu, C. Charles
Chen, Yii-Der Ida
Lee, Wen-Jane
Shoemaker, M. Benjamin
Darbar, Dawood
Roden, Dan
Albert, Christine
Kooperberg, Charles
Desai, Pinkal
Blackwell, Thomas W.
Abecasis, Goncalo R.
Smith, Albert V.
Kang, Hyun M.
Mathias, Rasika
Natarajan, Pradeep
Jaiswal, Siddhartha
Reiner, Alexander P.
Bick, Alexander G.
The genetic determinants of recurrent somatic mutations in 43,693 blood genomes
title The genetic determinants of recurrent somatic mutations in 43,693 blood genomes
title_full The genetic determinants of recurrent somatic mutations in 43,693 blood genomes
title_fullStr The genetic determinants of recurrent somatic mutations in 43,693 blood genomes
title_full_unstemmed The genetic determinants of recurrent somatic mutations in 43,693 blood genomes
title_short The genetic determinants of recurrent somatic mutations in 43,693 blood genomes
title_sort genetic determinants of recurrent somatic mutations in 43,693 blood genomes
topic Biomedicine and Life Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10132750/
https://www.ncbi.nlm.nih.gov/pubmed/37126548
http://dx.doi.org/10.1126/sciadv.abm4945
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