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PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children
Computer-aided diagnosis systems in adult chest radiography (CXR) have recently achieved great success thanks to the availability of large-scale, annotated datasets and the advent of high-performance supervised learning algorithms. However, the development of diagnostic models for detecting and diag...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10133237/ https://www.ncbi.nlm.nih.gov/pubmed/37100784 http://dx.doi.org/10.1038/s41597-023-02102-5 |
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author | Pham, Hieu H. Nguyen, Ngoc H. Tran, Thanh T. Nguyen, Tuan N. M. Nguyen, Ha Q. |
author_facet | Pham, Hieu H. Nguyen, Ngoc H. Tran, Thanh T. Nguyen, Tuan N. M. Nguyen, Ha Q. |
author_sort | Pham, Hieu H. |
collection | PubMed |
description | Computer-aided diagnosis systems in adult chest radiography (CXR) have recently achieved great success thanks to the availability of large-scale, annotated datasets and the advent of high-performance supervised learning algorithms. However, the development of diagnostic models for detecting and diagnosing pediatric diseases in CXR scans is undertaken due to the lack of high-quality physician-annotated datasets. To overcome this challenge, we introduce and release PediCXR, a new pediatric CXR dataset of 9,125 studies retrospectively collected from a major pediatric hospital in Vietnam between 2020 and 2021. Each scan was manually annotated by a pediatric radiologist with more than ten years of experience. The dataset was labeled for the presence of 36 critical findings and 15 diseases. In particular, each abnormal finding was identified via a rectangle bounding box on the image. To the best of our knowledge, this is the first and largest pediatric CXR dataset containing lesion-level annotations and image-level labels for the detection of multiple findings and diseases. For algorithm development, the dataset was divided into a training set of 7,728 and a test set of 1,397. To encourage new advances in pediatric CXR interpretation using data-driven approaches, we provide a detailed description of the PediCXR data sample and make the dataset publicly available on https://physionet.org/content/vindr-pcxr/1.0.0/. |
format | Online Article Text |
id | pubmed-10133237 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101332372023-04-28 PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children Pham, Hieu H. Nguyen, Ngoc H. Tran, Thanh T. Nguyen, Tuan N. M. Nguyen, Ha Q. Sci Data Data Descriptor Computer-aided diagnosis systems in adult chest radiography (CXR) have recently achieved great success thanks to the availability of large-scale, annotated datasets and the advent of high-performance supervised learning algorithms. However, the development of diagnostic models for detecting and diagnosing pediatric diseases in CXR scans is undertaken due to the lack of high-quality physician-annotated datasets. To overcome this challenge, we introduce and release PediCXR, a new pediatric CXR dataset of 9,125 studies retrospectively collected from a major pediatric hospital in Vietnam between 2020 and 2021. Each scan was manually annotated by a pediatric radiologist with more than ten years of experience. The dataset was labeled for the presence of 36 critical findings and 15 diseases. In particular, each abnormal finding was identified via a rectangle bounding box on the image. To the best of our knowledge, this is the first and largest pediatric CXR dataset containing lesion-level annotations and image-level labels for the detection of multiple findings and diseases. For algorithm development, the dataset was divided into a training set of 7,728 and a test set of 1,397. To encourage new advances in pediatric CXR interpretation using data-driven approaches, we provide a detailed description of the PediCXR data sample and make the dataset publicly available on https://physionet.org/content/vindr-pcxr/1.0.0/. Nature Publishing Group UK 2023-04-27 /pmc/articles/PMC10133237/ /pubmed/37100784 http://dx.doi.org/10.1038/s41597-023-02102-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Pham, Hieu H. Nguyen, Ngoc H. Tran, Thanh T. Nguyen, Tuan N. M. Nguyen, Ha Q. PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
title | PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
title_full | PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
title_fullStr | PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
title_full_unstemmed | PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
title_short | PediCXR: An open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
title_sort | pedicxr: an open, large-scale chest radiograph dataset for interpretation of common thoracic diseases in children |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10133237/ https://www.ncbi.nlm.nih.gov/pubmed/37100784 http://dx.doi.org/10.1038/s41597-023-02102-5 |
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