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Cost-Effective Simulations of Vibrationally-Resolved Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous Broadening
[Image: see text] The results of electronic and vibrational structure simulations are an invaluable support for interpreting experimental absorption/emission spectra, which stimulates the development of reliable and cost-effective computational protocols. In this work, we contribute to these efforts...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10134414/ https://www.ncbi.nlm.nih.gov/pubmed/37096370 http://dx.doi.org/10.1021/acs.jctc.2c01285 |
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author | Petrusevich, Elizaveta F. Bousquet, Manon H. E. Ośmiałowski, Borys Jacquemin, Denis Luis, Josep M. Zaleśny, Robert |
author_facet | Petrusevich, Elizaveta F. Bousquet, Manon H. E. Ośmiałowski, Borys Jacquemin, Denis Luis, Josep M. Zaleśny, Robert |
author_sort | Petrusevich, Elizaveta F. |
collection | PubMed |
description | [Image: see text] The results of electronic and vibrational structure simulations are an invaluable support for interpreting experimental absorption/emission spectra, which stimulates the development of reliable and cost-effective computational protocols. In this work, we contribute to these efforts and propose an efficient first-principle protocol for simulating vibrationally-resolved absorption spectra, including nonempirical estimations of the inhomogeneous broadening. To this end, we analyze three key aspects: (i) a metric-based selection of density functional approximation (DFA) so to benefit from the computational efficiency of time-dependent density function theory (TD-DFT) while safeguarding the accuracy of the vibrationally-resolved spectra, (ii) an assessment of two vibrational structure schemes (vertical gradient and adiabatic Hessian) to compute the Franck–Condon factors, and (iii) the use of machine learning to speed up nonempirical estimations of the inhomogeneous broadening. In more detail, we predict the absorption band shapes for a set of 20 medium-sized fluorescent dyes, focusing on the bright ππ(★) S(0) → S(1) transition and using experimental results as references. We demonstrate that, for the studied 20-dye set which includes structures with large structural variability, the preselection of DFAs based on an easily accessible metric ensures accurate band shapes with respect to the reference approach and that range-separated functionals show the best performance when combined with the vertical gradient model. As far as band widths are concerned, we propose a new machine-learning-based approach for determining the inhomogeneous broadening induced by the solvent microenvironment. This approach is shown to be very robust offering inhomogeneous broadenings with errors as small as 2 cm(–1) with respect to genuine electronic-structure calculations, with a total CPU time reduced by 98%. |
format | Online Article Text |
id | pubmed-10134414 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-101344142023-04-28 Cost-Effective Simulations of Vibrationally-Resolved Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous Broadening Petrusevich, Elizaveta F. Bousquet, Manon H. E. Ośmiałowski, Borys Jacquemin, Denis Luis, Josep M. Zaleśny, Robert J Chem Theory Comput [Image: see text] The results of electronic and vibrational structure simulations are an invaluable support for interpreting experimental absorption/emission spectra, which stimulates the development of reliable and cost-effective computational protocols. In this work, we contribute to these efforts and propose an efficient first-principle protocol for simulating vibrationally-resolved absorption spectra, including nonempirical estimations of the inhomogeneous broadening. To this end, we analyze three key aspects: (i) a metric-based selection of density functional approximation (DFA) so to benefit from the computational efficiency of time-dependent density function theory (TD-DFT) while safeguarding the accuracy of the vibrationally-resolved spectra, (ii) an assessment of two vibrational structure schemes (vertical gradient and adiabatic Hessian) to compute the Franck–Condon factors, and (iii) the use of machine learning to speed up nonempirical estimations of the inhomogeneous broadening. In more detail, we predict the absorption band shapes for a set of 20 medium-sized fluorescent dyes, focusing on the bright ππ(★) S(0) → S(1) transition and using experimental results as references. We demonstrate that, for the studied 20-dye set which includes structures with large structural variability, the preselection of DFAs based on an easily accessible metric ensures accurate band shapes with respect to the reference approach and that range-separated functionals show the best performance when combined with the vertical gradient model. As far as band widths are concerned, we propose a new machine-learning-based approach for determining the inhomogeneous broadening induced by the solvent microenvironment. This approach is shown to be very robust offering inhomogeneous broadenings with errors as small as 2 cm(–1) with respect to genuine electronic-structure calculations, with a total CPU time reduced by 98%. American Chemical Society 2023-04-05 /pmc/articles/PMC10134414/ /pubmed/37096370 http://dx.doi.org/10.1021/acs.jctc.2c01285 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Petrusevich, Elizaveta F. Bousquet, Manon H. E. Ośmiałowski, Borys Jacquemin, Denis Luis, Josep M. Zaleśny, Robert Cost-Effective Simulations of Vibrationally-Resolved Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous Broadening |
title | Cost-Effective
Simulations of Vibrationally-Resolved
Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous
Broadening |
title_full | Cost-Effective
Simulations of Vibrationally-Resolved
Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous
Broadening |
title_fullStr | Cost-Effective
Simulations of Vibrationally-Resolved
Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous
Broadening |
title_full_unstemmed | Cost-Effective
Simulations of Vibrationally-Resolved
Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous
Broadening |
title_short | Cost-Effective
Simulations of Vibrationally-Resolved
Absorption Spectra of Fluorophores with Machine-Learning-Based Inhomogeneous
Broadening |
title_sort | cost-effective
simulations of vibrationally-resolved
absorption spectra of fluorophores with machine-learning-based inhomogeneous
broadening |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10134414/ https://www.ncbi.nlm.nih.gov/pubmed/37096370 http://dx.doi.org/10.1021/acs.jctc.2c01285 |
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