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Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution

Accurate segmentation of brain tumors from magnetic resonance 3D images (MRI) is critical for clinical decisions and surgical planning. Radiologists usually separate and analyze brain tumors by combining images of axial, coronal, and sagittal views. However, traditional convolutional neural network...

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Autores principales: Guan, Xin, Zhao, Yushan, Nyatega, Charles Okanda, Li, Qiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10136543/
https://www.ncbi.nlm.nih.gov/pubmed/37190614
http://dx.doi.org/10.3390/brainsci13040650
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author Guan, Xin
Zhao, Yushan
Nyatega, Charles Okanda
Li, Qiang
author_facet Guan, Xin
Zhao, Yushan
Nyatega, Charles Okanda
Li, Qiang
author_sort Guan, Xin
collection PubMed
description Accurate segmentation of brain tumors from magnetic resonance 3D images (MRI) is critical for clinical decisions and surgical planning. Radiologists usually separate and analyze brain tumors by combining images of axial, coronal, and sagittal views. However, traditional convolutional neural network (CNN) models tend to use information from only a single view or one by one. Moreover, the existing models adopt a multi-branch structure with different-size convolution kernels in parallel to adapt to various tumor sizes. However, the difference in the convolution kernels’ parameters cannot precisely characterize the feature similarity of tumor lesion regions with various sizes, connectivity, and convexity. To address the above problems, we propose a hierarchical multi-view convolution method that decouples the standard 3D convolution into axial, coronal, and sagittal views to provide complementary-view features. Then, every pixel is classified by ensembling the discriminant results from the three views. Moreover, we propose a multi-branch kernel-sharing mechanism with a dilated rate to obtain parameter-consistent convolution kernels with different receptive fields. We use the BraTS2018 and BraTS2020 datasets for comparison experiments. The average Dice coefficients of the proposed network on the BraTS2020 dataset can reach 78.16%, 89.52%, and 83.05% for the enhancing tumor (ET), whole tumor (WT), and tumor core (TC), respectively, while the number of parameters is only 0.5 M. Compared with the baseline network for brain tumor segmentation, the accuracy was improved by 1.74%, 0.5%, and 2.19%, respectively.
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spelling pubmed-101365432023-04-28 Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution Guan, Xin Zhao, Yushan Nyatega, Charles Okanda Li, Qiang Brain Sci Article Accurate segmentation of brain tumors from magnetic resonance 3D images (MRI) is critical for clinical decisions and surgical planning. Radiologists usually separate and analyze brain tumors by combining images of axial, coronal, and sagittal views. However, traditional convolutional neural network (CNN) models tend to use information from only a single view or one by one. Moreover, the existing models adopt a multi-branch structure with different-size convolution kernels in parallel to adapt to various tumor sizes. However, the difference in the convolution kernels’ parameters cannot precisely characterize the feature similarity of tumor lesion regions with various sizes, connectivity, and convexity. To address the above problems, we propose a hierarchical multi-view convolution method that decouples the standard 3D convolution into axial, coronal, and sagittal views to provide complementary-view features. Then, every pixel is classified by ensembling the discriminant results from the three views. Moreover, we propose a multi-branch kernel-sharing mechanism with a dilated rate to obtain parameter-consistent convolution kernels with different receptive fields. We use the BraTS2018 and BraTS2020 datasets for comparison experiments. The average Dice coefficients of the proposed network on the BraTS2020 dataset can reach 78.16%, 89.52%, and 83.05% for the enhancing tumor (ET), whole tumor (WT), and tumor core (TC), respectively, while the number of parameters is only 0.5 M. Compared with the baseline network for brain tumor segmentation, the accuracy was improved by 1.74%, 0.5%, and 2.19%, respectively. MDPI 2023-04-11 /pmc/articles/PMC10136543/ /pubmed/37190614 http://dx.doi.org/10.3390/brainsci13040650 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Guan, Xin
Zhao, Yushan
Nyatega, Charles Okanda
Li, Qiang
Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution
title Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution
title_full Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution
title_fullStr Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution
title_full_unstemmed Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution
title_short Brain Tumor Segmentation Network with Multi-View Ensemble Discrimination and Kernel-Sharing Dilated Convolution
title_sort brain tumor segmentation network with multi-view ensemble discrimination and kernel-sharing dilated convolution
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10136543/
https://www.ncbi.nlm.nih.gov/pubmed/37190614
http://dx.doi.org/10.3390/brainsci13040650
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