Cargando…

Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus

The blood diagnosis of diabetes mellitus (DM) is highly accurate; however, it is an invasive, high-cost, and painful procedure. In this context, the combination of ATR-FTIR spectroscopy and machine learning techniques in other biological samples has been used as an alternative tool to develop a non-...

Descripción completa

Detalles Bibliográficos
Autores principales: Caixeta, Douglas Carvalho, Carneiro, Murillo Guimarães, Rodrigues, Ricardo, Alves, Deborah Cristina Teixeira, Goulart, Luís Ricardo, Cunha, Thúlio Marquez, Espindola, Foued Salmen, Vitorino, Rui, Sabino-Silva, Robinson
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137088/
https://www.ncbi.nlm.nih.gov/pubmed/37189497
http://dx.doi.org/10.3390/diagnostics13081396
_version_ 1785032375224238080
author Caixeta, Douglas Carvalho
Carneiro, Murillo Guimarães
Rodrigues, Ricardo
Alves, Deborah Cristina Teixeira
Goulart, Luís Ricardo
Cunha, Thúlio Marquez
Espindola, Foued Salmen
Vitorino, Rui
Sabino-Silva, Robinson
author_facet Caixeta, Douglas Carvalho
Carneiro, Murillo Guimarães
Rodrigues, Ricardo
Alves, Deborah Cristina Teixeira
Goulart, Luís Ricardo
Cunha, Thúlio Marquez
Espindola, Foued Salmen
Vitorino, Rui
Sabino-Silva, Robinson
author_sort Caixeta, Douglas Carvalho
collection PubMed
description The blood diagnosis of diabetes mellitus (DM) is highly accurate; however, it is an invasive, high-cost, and painful procedure. In this context, the combination of ATR-FTIR spectroscopy and machine learning techniques in other biological samples has been used as an alternative tool to develop a non-invasive, fast, inexpensive, and label-free diagnostic or screening platform for several diseases, including DM. In this study, we used the ATR-FTIR tool associated with linear discriminant analysis (LDA) and a support vector machine (SVM) classifier in order to identify changes in salivary components to be used as alternative biomarkers for the diagnosis of type 2 DM. The band area values of 2962 cm(−1), 1641 cm(−1), and 1073 cm(−1) were higher in type 2 diabetic patients than in non-diabetic subjects. The best classification of salivary infrared spectra was by SVM, showing a sensitivity of 93.3% (42/45), specificity of 74% (17/23), and accuracy of 87% between non-diabetic subjects and uncontrolled type 2 DM patients. The SHAP features of infrared spectra indicate the main salivary vibrational modes of lipids and proteins that are responsible for discriminating DM patients. In summary, these data highlight the potential of ATR-FTIR platforms coupled with machine learning as a reagent-free, non-invasive, and highly sensitive tool for screening and monitoring diabetic patients.
format Online
Article
Text
id pubmed-10137088
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-101370882023-04-28 Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus Caixeta, Douglas Carvalho Carneiro, Murillo Guimarães Rodrigues, Ricardo Alves, Deborah Cristina Teixeira Goulart, Luís Ricardo Cunha, Thúlio Marquez Espindola, Foued Salmen Vitorino, Rui Sabino-Silva, Robinson Diagnostics (Basel) Article The blood diagnosis of diabetes mellitus (DM) is highly accurate; however, it is an invasive, high-cost, and painful procedure. In this context, the combination of ATR-FTIR spectroscopy and machine learning techniques in other biological samples has been used as an alternative tool to develop a non-invasive, fast, inexpensive, and label-free diagnostic or screening platform for several diseases, including DM. In this study, we used the ATR-FTIR tool associated with linear discriminant analysis (LDA) and a support vector machine (SVM) classifier in order to identify changes in salivary components to be used as alternative biomarkers for the diagnosis of type 2 DM. The band area values of 2962 cm(−1), 1641 cm(−1), and 1073 cm(−1) were higher in type 2 diabetic patients than in non-diabetic subjects. The best classification of salivary infrared spectra was by SVM, showing a sensitivity of 93.3% (42/45), specificity of 74% (17/23), and accuracy of 87% between non-diabetic subjects and uncontrolled type 2 DM patients. The SHAP features of infrared spectra indicate the main salivary vibrational modes of lipids and proteins that are responsible for discriminating DM patients. In summary, these data highlight the potential of ATR-FTIR platforms coupled with machine learning as a reagent-free, non-invasive, and highly sensitive tool for screening and monitoring diabetic patients. MDPI 2023-04-12 /pmc/articles/PMC10137088/ /pubmed/37189497 http://dx.doi.org/10.3390/diagnostics13081396 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Caixeta, Douglas Carvalho
Carneiro, Murillo Guimarães
Rodrigues, Ricardo
Alves, Deborah Cristina Teixeira
Goulart, Luís Ricardo
Cunha, Thúlio Marquez
Espindola, Foued Salmen
Vitorino, Rui
Sabino-Silva, Robinson
Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus
title Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus
title_full Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus
title_fullStr Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus
title_full_unstemmed Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus
title_short Salivary ATR-FTIR Spectroscopy Coupled with Support Vector Machine Classification for Screening of Type 2 Diabetes Mellitus
title_sort salivary atr-ftir spectroscopy coupled with support vector machine classification for screening of type 2 diabetes mellitus
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137088/
https://www.ncbi.nlm.nih.gov/pubmed/37189497
http://dx.doi.org/10.3390/diagnostics13081396
work_keys_str_mv AT caixetadouglascarvalho salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT carneiromurilloguimaraes salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT rodriguesricardo salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT alvesdeborahcristinateixeira salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT goulartluisricardo salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT cunhathuliomarquez salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT espindolafouedsalmen salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT vitorinorui salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus
AT sabinosilvarobinson salivaryatrftirspectroscopycoupledwithsupportvectormachineclassificationforscreeningoftype2diabetesmellitus