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How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?

Experimentalists observe allele frequency distributions and try to infer mutation rates and selection coefficients. How easy is this? We calculate limits to their ability in the context of the Wright-Fisher model by first finding the maximal amount of information that can be acquired using allele fr...

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Autores principales: Soriano, Jonathan, Marzen, Sarah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137336/
https://www.ncbi.nlm.nih.gov/pubmed/37190403
http://dx.doi.org/10.3390/e25040615
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author Soriano, Jonathan
Marzen, Sarah
author_facet Soriano, Jonathan
Marzen, Sarah
author_sort Soriano, Jonathan
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description Experimentalists observe allele frequency distributions and try to infer mutation rates and selection coefficients. How easy is this? We calculate limits to their ability in the context of the Wright-Fisher model by first finding the maximal amount of information that can be acquired using allele frequencies about the mutation rate and selection coefficient– at least 2 bits per allele– and then by finding how the organisms would have shaped their mutation rates and selection coefficients so as to maximize the information transfer.
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spelling pubmed-101373362023-04-28 How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies? Soriano, Jonathan Marzen, Sarah Entropy (Basel) Article Experimentalists observe allele frequency distributions and try to infer mutation rates and selection coefficients. How easy is this? We calculate limits to their ability in the context of the Wright-Fisher model by first finding the maximal amount of information that can be acquired using allele frequencies about the mutation rate and selection coefficient– at least 2 bits per allele– and then by finding how the organisms would have shaped their mutation rates and selection coefficients so as to maximize the information transfer. MDPI 2023-04-04 /pmc/articles/PMC10137336/ /pubmed/37190403 http://dx.doi.org/10.3390/e25040615 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Soriano, Jonathan
Marzen, Sarah
How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?
title How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?
title_full How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?
title_fullStr How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?
title_full_unstemmed How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?
title_short How Well Can We Infer Selection Benefits and Mutation Rates from Allele Frequencies?
title_sort how well can we infer selection benefits and mutation rates from allele frequencies?
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137336/
https://www.ncbi.nlm.nih.gov/pubmed/37190403
http://dx.doi.org/10.3390/e25040615
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