Cargando…
Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was perform...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137689/ https://www.ncbi.nlm.nih.gov/pubmed/37107695 http://dx.doi.org/10.3390/genes14040937 |
_version_ | 1785032526892367872 |
---|---|
author | Avnat, Eden Shapira, Guy Shoval, Shelly Israel-Elgali, Ifat Alkelai, Anna Shuldiner, Alan R. Gonzaga-Jauregui, Claudia Zidan, Jamal Maray, Taiseer Shomron, Noam Friedman, Eitan |
author_facet | Avnat, Eden Shapira, Guy Shoval, Shelly Israel-Elgali, Ifat Alkelai, Anna Shuldiner, Alan R. Gonzaga-Jauregui, Claudia Zidan, Jamal Maray, Taiseer Shomron, Noam Friedman, Eitan |
author_sort | Avnat, Eden |
collection | PubMed |
description | Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was performed (HGDP-cohort). Additionally, we performed whole exome sequencing (WES) of 118 Druze individuals: 38 trios and 2 couples, representing geographically distinct clans (WES-cohort). Rates of validated PV were compared with rates in worldwide and Middle Eastern populations, from the gnomAD and dbSNP datasets. Results: Overall, 34 PVs were identified: 30 PVs in genes underlying AR disorders, 3 additional PVs were associated with autosomal dominant (AD) disorders, and 1 PV with X-linked-dominant inherited disorder in the WES cohort. Conclusions: The newly identified PVs associated with AR conditions should be considered for incorporation into prenatal-screening options offered to Druze individuals after an extension and validation of the results in a larger study. |
format | Online Article Text |
id | pubmed-10137689 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101376892023-04-28 Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening Avnat, Eden Shapira, Guy Shoval, Shelly Israel-Elgali, Ifat Alkelai, Anna Shuldiner, Alan R. Gonzaga-Jauregui, Claudia Zidan, Jamal Maray, Taiseer Shomron, Noam Friedman, Eitan Genes (Basel) Article Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was performed (HGDP-cohort). Additionally, we performed whole exome sequencing (WES) of 118 Druze individuals: 38 trios and 2 couples, representing geographically distinct clans (WES-cohort). Rates of validated PV were compared with rates in worldwide and Middle Eastern populations, from the gnomAD and dbSNP datasets. Results: Overall, 34 PVs were identified: 30 PVs in genes underlying AR disorders, 3 additional PVs were associated with autosomal dominant (AD) disorders, and 1 PV with X-linked-dominant inherited disorder in the WES cohort. Conclusions: The newly identified PVs associated with AR conditions should be considered for incorporation into prenatal-screening options offered to Druze individuals after an extension and validation of the results in a larger study. MDPI 2023-04-18 /pmc/articles/PMC10137689/ /pubmed/37107695 http://dx.doi.org/10.3390/genes14040937 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Avnat, Eden Shapira, Guy Shoval, Shelly Israel-Elgali, Ifat Alkelai, Anna Shuldiner, Alan R. Gonzaga-Jauregui, Claudia Zidan, Jamal Maray, Taiseer Shomron, Noam Friedman, Eitan Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening |
title | Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening |
title_full | Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening |
title_fullStr | Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening |
title_full_unstemmed | Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening |
title_short | Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening |
title_sort | comprehensive genetic analysis of druze provides insights into carrier screening |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137689/ https://www.ncbi.nlm.nih.gov/pubmed/37107695 http://dx.doi.org/10.3390/genes14040937 |
work_keys_str_mv | AT avnateden comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT shapiraguy comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT shovalshelly comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT israelelgaliifat comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT alkelaianna comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT shuldineralanr comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT gonzagajaureguiclaudia comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT zidanjamal comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT maraytaiseer comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT shomronnoam comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening AT friedmaneitan comprehensivegeneticanalysisofdruzeprovidesinsightsintocarrierscreening |