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Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening

Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was perform...

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Autores principales: Avnat, Eden, Shapira, Guy, Shoval, Shelly, Israel-Elgali, Ifat, Alkelai, Anna, Shuldiner, Alan R., Gonzaga-Jauregui, Claudia, Zidan, Jamal, Maray, Taiseer, Shomron, Noam, Friedman, Eitan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137689/
https://www.ncbi.nlm.nih.gov/pubmed/37107695
http://dx.doi.org/10.3390/genes14040937
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author Avnat, Eden
Shapira, Guy
Shoval, Shelly
Israel-Elgali, Ifat
Alkelai, Anna
Shuldiner, Alan R.
Gonzaga-Jauregui, Claudia
Zidan, Jamal
Maray, Taiseer
Shomron, Noam
Friedman, Eitan
author_facet Avnat, Eden
Shapira, Guy
Shoval, Shelly
Israel-Elgali, Ifat
Alkelai, Anna
Shuldiner, Alan R.
Gonzaga-Jauregui, Claudia
Zidan, Jamal
Maray, Taiseer
Shomron, Noam
Friedman, Eitan
author_sort Avnat, Eden
collection PubMed
description Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was performed (HGDP-cohort). Additionally, we performed whole exome sequencing (WES) of 118 Druze individuals: 38 trios and 2 couples, representing geographically distinct clans (WES-cohort). Rates of validated PV were compared with rates in worldwide and Middle Eastern populations, from the gnomAD and dbSNP datasets. Results: Overall, 34 PVs were identified: 30 PVs in genes underlying AR disorders, 3 additional PVs were associated with autosomal dominant (AD) disorders, and 1 PV with X-linked-dominant inherited disorder in the WES cohort. Conclusions: The newly identified PVs associated with AR conditions should be considered for incorporation into prenatal-screening options offered to Druze individuals after an extension and validation of the results in a larger study.
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spelling pubmed-101376892023-04-28 Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening Avnat, Eden Shapira, Guy Shoval, Shelly Israel-Elgali, Ifat Alkelai, Anna Shuldiner, Alan R. Gonzaga-Jauregui, Claudia Zidan, Jamal Maray, Taiseer Shomron, Noam Friedman, Eitan Genes (Basel) Article Background: Druze individuals, like many genetically homogeneous and isolated populations, harbor recurring pathogenic variants (PV) in autosomal recessive (AR) disorders. Methods: Variant calling of whole-genome sequencing (WGS) of 40 Druze from the Human Genome Diversity Project (HGDP) was performed (HGDP-cohort). Additionally, we performed whole exome sequencing (WES) of 118 Druze individuals: 38 trios and 2 couples, representing geographically distinct clans (WES-cohort). Rates of validated PV were compared with rates in worldwide and Middle Eastern populations, from the gnomAD and dbSNP datasets. Results: Overall, 34 PVs were identified: 30 PVs in genes underlying AR disorders, 3 additional PVs were associated with autosomal dominant (AD) disorders, and 1 PV with X-linked-dominant inherited disorder in the WES cohort. Conclusions: The newly identified PVs associated with AR conditions should be considered for incorporation into prenatal-screening options offered to Druze individuals after an extension and validation of the results in a larger study. MDPI 2023-04-18 /pmc/articles/PMC10137689/ /pubmed/37107695 http://dx.doi.org/10.3390/genes14040937 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Avnat, Eden
Shapira, Guy
Shoval, Shelly
Israel-Elgali, Ifat
Alkelai, Anna
Shuldiner, Alan R.
Gonzaga-Jauregui, Claudia
Zidan, Jamal
Maray, Taiseer
Shomron, Noam
Friedman, Eitan
Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
title Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
title_full Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
title_fullStr Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
title_full_unstemmed Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
title_short Comprehensive Genetic Analysis of Druze Provides Insights into Carrier Screening
title_sort comprehensive genetic analysis of druze provides insights into carrier screening
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137689/
https://www.ncbi.nlm.nih.gov/pubmed/37107695
http://dx.doi.org/10.3390/genes14040937
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