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The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions

Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain H(2)O(2) homeostasis and normalize plant reaction to abiotic stress conditions. However, the genome-wide identification of the GPX gene family and its responses to environmental stresses, especia...

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Autores principales: Lian, Ziming, Zhang, Jingbo, Hao, Zhaodong, Zhu, Liming, Liu, Yuxin, Fang, Hao, Lu, Ye, Li, Xinle, Shi, Jisen, Chen, Jinhui, Cheng, Tielong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137829/
https://www.ncbi.nlm.nih.gov/pubmed/37107708
http://dx.doi.org/10.3390/genes14040950
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author Lian, Ziming
Zhang, Jingbo
Hao, Zhaodong
Zhu, Liming
Liu, Yuxin
Fang, Hao
Lu, Ye
Li, Xinle
Shi, Jisen
Chen, Jinhui
Cheng, Tielong
author_facet Lian, Ziming
Zhang, Jingbo
Hao, Zhaodong
Zhu, Liming
Liu, Yuxin
Fang, Hao
Lu, Ye
Li, Xinle
Shi, Jisen
Chen, Jinhui
Cheng, Tielong
author_sort Lian, Ziming
collection PubMed
description Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain H(2)O(2) homeostasis and normalize plant reaction to abiotic stress conditions. However, the genome-wide identification of the GPX gene family and its responses to environmental stresses, especially salt stress, in Nitraria sibirica, which is a shrub that can survive in saline environments, has not yet been reported. Here, we first report the genome-wide analysis of the GPX gene family in N. sibirica, leading to a total of seven NsGPX genes that are distributed on six of the twelve chromosomes. Phylogenetic analysis showed that NsGPX genes were grouped into four major groups (Group I-IV). Three types of cis-acting elements were identified in the NsGPX promoters, mainly related to hormones and stress response. The quantitative real-time PCR (qRT-PCR) analysis indicated that NsGPX1 and NsGPX3 were significantly up-regulated in stem and leaf, while NsGPX7 transcriptionally in root in response to salt stress. The current study identified a total seven NsGPX genes in N. sibirica via genome-wide analysis, and discovered that NsGPXs may play an important role in response to salt stress. Taken together, our findings provide a basis for further functional studies of NsGPX genes, especially in regarding to the resistance to salt stress of this halophyte plant N. sibirica, eventually aid in the discovery of new methods to restore overtly saline soil.
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spelling pubmed-101378292023-04-28 The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions Lian, Ziming Zhang, Jingbo Hao, Zhaodong Zhu, Liming Liu, Yuxin Fang, Hao Lu, Ye Li, Xinle Shi, Jisen Chen, Jinhui Cheng, Tielong Genes (Basel) Article Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain H(2)O(2) homeostasis and normalize plant reaction to abiotic stress conditions. However, the genome-wide identification of the GPX gene family and its responses to environmental stresses, especially salt stress, in Nitraria sibirica, which is a shrub that can survive in saline environments, has not yet been reported. Here, we first report the genome-wide analysis of the GPX gene family in N. sibirica, leading to a total of seven NsGPX genes that are distributed on six of the twelve chromosomes. Phylogenetic analysis showed that NsGPX genes were grouped into four major groups (Group I-IV). Three types of cis-acting elements were identified in the NsGPX promoters, mainly related to hormones and stress response. The quantitative real-time PCR (qRT-PCR) analysis indicated that NsGPX1 and NsGPX3 were significantly up-regulated in stem and leaf, while NsGPX7 transcriptionally in root in response to salt stress. The current study identified a total seven NsGPX genes in N. sibirica via genome-wide analysis, and discovered that NsGPXs may play an important role in response to salt stress. Taken together, our findings provide a basis for further functional studies of NsGPX genes, especially in regarding to the resistance to salt stress of this halophyte plant N. sibirica, eventually aid in the discovery of new methods to restore overtly saline soil. MDPI 2023-04-21 /pmc/articles/PMC10137829/ /pubmed/37107708 http://dx.doi.org/10.3390/genes14040950 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lian, Ziming
Zhang, Jingbo
Hao, Zhaodong
Zhu, Liming
Liu, Yuxin
Fang, Hao
Lu, Ye
Li, Xinle
Shi, Jisen
Chen, Jinhui
Cheng, Tielong
The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions
title The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions
title_full The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions
title_fullStr The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions
title_full_unstemmed The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions
title_short The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions
title_sort glutathione peroxidase gene family in nitraria sibirica: genome-wide identification, classification, and gene expression analysis under stress conditions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10137829/
https://www.ncbi.nlm.nih.gov/pubmed/37107708
http://dx.doi.org/10.3390/genes14040950
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