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Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images

Identifying Human Epithelial Type 2 (HEp-2) mitotic cells is a crucial procedure in anti-nuclear antibodies (ANAs) testing, which is the standard protocol for detecting connective tissue diseases (CTD). Due to the low throughput and labor-subjectivity of the ANAs’ manual screening test, there is a n...

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Autores principales: Anaam, Asaad, Al-antari, Mugahed A., Hussain, Jamil, Abdel Samee, Nagwan, Alabdulhafith, Maali, Gofuku, Akio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138071/
https://www.ncbi.nlm.nih.gov/pubmed/37189517
http://dx.doi.org/10.3390/diagnostics13081416
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author Anaam, Asaad
Al-antari, Mugahed A.
Hussain, Jamil
Abdel Samee, Nagwan
Alabdulhafith, Maali
Gofuku, Akio
author_facet Anaam, Asaad
Al-antari, Mugahed A.
Hussain, Jamil
Abdel Samee, Nagwan
Alabdulhafith, Maali
Gofuku, Akio
author_sort Anaam, Asaad
collection PubMed
description Identifying Human Epithelial Type 2 (HEp-2) mitotic cells is a crucial procedure in anti-nuclear antibodies (ANAs) testing, which is the standard protocol for detecting connective tissue diseases (CTD). Due to the low throughput and labor-subjectivity of the ANAs’ manual screening test, there is a need to develop a reliable HEp-2 computer-aided diagnosis (CAD) system. The automatic detection of mitotic cells from the microscopic HEp-2 specimen images is an essential step to support the diagnosis process and enhance the throughput of this test. This work proposes a deep active learning (DAL) approach to overcoming the cell labeling challenge. Moreover, deep learning detectors are tailored to automatically identify the mitotic cells directly in the entire microscopic HEp-2 specimen images, avoiding the segmentation step. The proposed framework is validated using the I3A Task-2 dataset over 5-fold cross-validation trials. Using the YOLO predictor, promising mitotic cell prediction results are achieved with an average of 90.011% recall, 88.307% precision, and 81.531% mAP. Whereas, average scores of 86.986% recall, 85.282% precision, and 78.506% mAP are obtained using the Faster R-CNN predictor. Employing the DAL method over four labeling rounds effectively enhances the accuracy of the data annotation, and hence, improves the prediction performance. The proposed framework could be practically applicable to support medical personnel in making rapid and accurate decisions about the mitotic cells’ existence.
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spelling pubmed-101380712023-04-28 Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images Anaam, Asaad Al-antari, Mugahed A. Hussain, Jamil Abdel Samee, Nagwan Alabdulhafith, Maali Gofuku, Akio Diagnostics (Basel) Article Identifying Human Epithelial Type 2 (HEp-2) mitotic cells is a crucial procedure in anti-nuclear antibodies (ANAs) testing, which is the standard protocol for detecting connective tissue diseases (CTD). Due to the low throughput and labor-subjectivity of the ANAs’ manual screening test, there is a need to develop a reliable HEp-2 computer-aided diagnosis (CAD) system. The automatic detection of mitotic cells from the microscopic HEp-2 specimen images is an essential step to support the diagnosis process and enhance the throughput of this test. This work proposes a deep active learning (DAL) approach to overcoming the cell labeling challenge. Moreover, deep learning detectors are tailored to automatically identify the mitotic cells directly in the entire microscopic HEp-2 specimen images, avoiding the segmentation step. The proposed framework is validated using the I3A Task-2 dataset over 5-fold cross-validation trials. Using the YOLO predictor, promising mitotic cell prediction results are achieved with an average of 90.011% recall, 88.307% precision, and 81.531% mAP. Whereas, average scores of 86.986% recall, 85.282% precision, and 78.506% mAP are obtained using the Faster R-CNN predictor. Employing the DAL method over four labeling rounds effectively enhances the accuracy of the data annotation, and hence, improves the prediction performance. The proposed framework could be practically applicable to support medical personnel in making rapid and accurate decisions about the mitotic cells’ existence. MDPI 2023-04-14 /pmc/articles/PMC10138071/ /pubmed/37189517 http://dx.doi.org/10.3390/diagnostics13081416 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Anaam, Asaad
Al-antari, Mugahed A.
Hussain, Jamil
Abdel Samee, Nagwan
Alabdulhafith, Maali
Gofuku, Akio
Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images
title Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images
title_full Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images
title_fullStr Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images
title_full_unstemmed Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images
title_short Deep Active Learning for Automatic Mitotic Cell Detection on HEp-2 Specimen Medical Images
title_sort deep active learning for automatic mitotic cell detection on hep-2 specimen medical images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138071/
https://www.ncbi.nlm.nih.gov/pubmed/37189517
http://dx.doi.org/10.3390/diagnostics13081416
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