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Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass

Plant-specific TCP transcription factors regulate several plant growth and development processes. Nevertheless, little information is available about the TCP family in orchardgrass (Dactylis glomerata L.). This study identified 22 DgTCP transcription factors in orchardgrass and determined their stru...

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Autores principales: Wang, Cheng, Feng, Guangyan, Xu, Xiaoheng, Huang, Linkai, Nie, Gang, Li, Dandan, Zhang, Xinquan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138293/
https://www.ncbi.nlm.nih.gov/pubmed/37107682
http://dx.doi.org/10.3390/genes14040925
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author Wang, Cheng
Feng, Guangyan
Xu, Xiaoheng
Huang, Linkai
Nie, Gang
Li, Dandan
Zhang, Xinquan
author_facet Wang, Cheng
Feng, Guangyan
Xu, Xiaoheng
Huang, Linkai
Nie, Gang
Li, Dandan
Zhang, Xinquan
author_sort Wang, Cheng
collection PubMed
description Plant-specific TCP transcription factors regulate several plant growth and development processes. Nevertheless, little information is available about the TCP family in orchardgrass (Dactylis glomerata L.). This study identified 22 DgTCP transcription factors in orchardgrass and determined their structure, phylogeny, and expression in different tissues and developmental stages. The phylogenetic tree classified the DgTCP gene family into two main subfamilies, including class I and II supported by the exon–intron structure and conserved motifs. The DgTCP promoter regions contained various cis-elements associated with hormones, growth and development, and stress responses, including MBS (drought inducibility), circadian (circadian rhythms), and TCA-element (salicylic acid responsiveness). Moreover, DgTCP9 possibly regulates tillering and flowering time. Additionally, several stress treatments upregulated DgTCP1, DgTCP2, DgTCP6, DgTCP12, and DgTCP17, indicting their potential effects regarding regulating responses to the respective stress. This research offers a valuable basis for further studies of the TCP gene family in other Gramineae and reveals new ideas for increasing gene utilization.
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spelling pubmed-101382932023-04-28 Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass Wang, Cheng Feng, Guangyan Xu, Xiaoheng Huang, Linkai Nie, Gang Li, Dandan Zhang, Xinquan Genes (Basel) Article Plant-specific TCP transcription factors regulate several plant growth and development processes. Nevertheless, little information is available about the TCP family in orchardgrass (Dactylis glomerata L.). This study identified 22 DgTCP transcription factors in orchardgrass and determined their structure, phylogeny, and expression in different tissues and developmental stages. The phylogenetic tree classified the DgTCP gene family into two main subfamilies, including class I and II supported by the exon–intron structure and conserved motifs. The DgTCP promoter regions contained various cis-elements associated with hormones, growth and development, and stress responses, including MBS (drought inducibility), circadian (circadian rhythms), and TCA-element (salicylic acid responsiveness). Moreover, DgTCP9 possibly regulates tillering and flowering time. Additionally, several stress treatments upregulated DgTCP1, DgTCP2, DgTCP6, DgTCP12, and DgTCP17, indicting their potential effects regarding regulating responses to the respective stress. This research offers a valuable basis for further studies of the TCP gene family in other Gramineae and reveals new ideas for increasing gene utilization. MDPI 2023-04-16 /pmc/articles/PMC10138293/ /pubmed/37107682 http://dx.doi.org/10.3390/genes14040925 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Cheng
Feng, Guangyan
Xu, Xiaoheng
Huang, Linkai
Nie, Gang
Li, Dandan
Zhang, Xinquan
Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
title Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
title_full Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
title_fullStr Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
title_full_unstemmed Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
title_short Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
title_sort genome-wide identification, characterization, and expression of tcp genes family in orchardgrass
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138293/
https://www.ncbi.nlm.nih.gov/pubmed/37107682
http://dx.doi.org/10.3390/genes14040925
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