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Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass
Plant-specific TCP transcription factors regulate several plant growth and development processes. Nevertheless, little information is available about the TCP family in orchardgrass (Dactylis glomerata L.). This study identified 22 DgTCP transcription factors in orchardgrass and determined their stru...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138293/ https://www.ncbi.nlm.nih.gov/pubmed/37107682 http://dx.doi.org/10.3390/genes14040925 |
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author | Wang, Cheng Feng, Guangyan Xu, Xiaoheng Huang, Linkai Nie, Gang Li, Dandan Zhang, Xinquan |
author_facet | Wang, Cheng Feng, Guangyan Xu, Xiaoheng Huang, Linkai Nie, Gang Li, Dandan Zhang, Xinquan |
author_sort | Wang, Cheng |
collection | PubMed |
description | Plant-specific TCP transcription factors regulate several plant growth and development processes. Nevertheless, little information is available about the TCP family in orchardgrass (Dactylis glomerata L.). This study identified 22 DgTCP transcription factors in orchardgrass and determined their structure, phylogeny, and expression in different tissues and developmental stages. The phylogenetic tree classified the DgTCP gene family into two main subfamilies, including class I and II supported by the exon–intron structure and conserved motifs. The DgTCP promoter regions contained various cis-elements associated with hormones, growth and development, and stress responses, including MBS (drought inducibility), circadian (circadian rhythms), and TCA-element (salicylic acid responsiveness). Moreover, DgTCP9 possibly regulates tillering and flowering time. Additionally, several stress treatments upregulated DgTCP1, DgTCP2, DgTCP6, DgTCP12, and DgTCP17, indicting their potential effects regarding regulating responses to the respective stress. This research offers a valuable basis for further studies of the TCP gene family in other Gramineae and reveals new ideas for increasing gene utilization. |
format | Online Article Text |
id | pubmed-10138293 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101382932023-04-28 Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass Wang, Cheng Feng, Guangyan Xu, Xiaoheng Huang, Linkai Nie, Gang Li, Dandan Zhang, Xinquan Genes (Basel) Article Plant-specific TCP transcription factors regulate several plant growth and development processes. Nevertheless, little information is available about the TCP family in orchardgrass (Dactylis glomerata L.). This study identified 22 DgTCP transcription factors in orchardgrass and determined their structure, phylogeny, and expression in different tissues and developmental stages. The phylogenetic tree classified the DgTCP gene family into two main subfamilies, including class I and II supported by the exon–intron structure and conserved motifs. The DgTCP promoter regions contained various cis-elements associated with hormones, growth and development, and stress responses, including MBS (drought inducibility), circadian (circadian rhythms), and TCA-element (salicylic acid responsiveness). Moreover, DgTCP9 possibly regulates tillering and flowering time. Additionally, several stress treatments upregulated DgTCP1, DgTCP2, DgTCP6, DgTCP12, and DgTCP17, indicting their potential effects regarding regulating responses to the respective stress. This research offers a valuable basis for further studies of the TCP gene family in other Gramineae and reveals new ideas for increasing gene utilization. MDPI 2023-04-16 /pmc/articles/PMC10138293/ /pubmed/37107682 http://dx.doi.org/10.3390/genes14040925 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Cheng Feng, Guangyan Xu, Xiaoheng Huang, Linkai Nie, Gang Li, Dandan Zhang, Xinquan Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass |
title | Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass |
title_full | Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass |
title_fullStr | Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass |
title_full_unstemmed | Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass |
title_short | Genome-Wide Identification, Characterization, and Expression of TCP Genes Family in Orchardgrass |
title_sort | genome-wide identification, characterization, and expression of tcp genes family in orchardgrass |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138293/ https://www.ncbi.nlm.nih.gov/pubmed/37107682 http://dx.doi.org/10.3390/genes14040925 |
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