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An open-source framework for synthetic post-dive Doppler ultrasound audio generation

Doppler ultrasound (DU) measurements are used to detect and evaluate venous gas emboli (VGE) formed after decompression. Automated methodologies for assessing VGE presence using signal processing have been developed on varying real-world datasets of limited size and without ground truth values preve...

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Autores principales: Le, David Q., Hoang, Andrew H., Azarang, Arian, Lance, Rachel M., Natoli, Michael, Gatrell, Alan, Blogg, S. Lesley, Dayton, Paul A., Tillmans, Frauke, Lindholm, Peter, Moon, Richard E., Papadopoulou, Virginie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138468/
https://www.ncbi.nlm.nih.gov/pubmed/37104279
http://dx.doi.org/10.1371/journal.pone.0284922
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author Le, David Q.
Hoang, Andrew H.
Azarang, Arian
Lance, Rachel M.
Natoli, Michael
Gatrell, Alan
Blogg, S. Lesley
Dayton, Paul A.
Tillmans, Frauke
Lindholm, Peter
Moon, Richard E.
Papadopoulou, Virginie
author_facet Le, David Q.
Hoang, Andrew H.
Azarang, Arian
Lance, Rachel M.
Natoli, Michael
Gatrell, Alan
Blogg, S. Lesley
Dayton, Paul A.
Tillmans, Frauke
Lindholm, Peter
Moon, Richard E.
Papadopoulou, Virginie
author_sort Le, David Q.
collection PubMed
description Doppler ultrasound (DU) measurements are used to detect and evaluate venous gas emboli (VGE) formed after decompression. Automated methodologies for assessing VGE presence using signal processing have been developed on varying real-world datasets of limited size and without ground truth values preventing objective evaluation. We develop and report a method to generate synthetic post-dive data using DU signals collected in both precordium and subclavian vein with varying degrees of bubbling matching field-standard grading metrics. This method is adaptable, modifiable, and reproducible, allowing for researchers to tune the produced dataset for their desired purpose. We provide the baseline Doppler recordings and code required to generate synthetic data for researchers to reproduce our work and improve upon it. We also provide a set of pre-made synthetic post-dive DU data spanning six scenarios representing the Spencer and Kisman-Masurel (KM) grading scales as well as precordial and subclavian DU recordings. By providing a method for synthetic post-dive DU data generation, we aim to improve and accelerate the development of signal processing techniques for VGE analysis in Doppler ultrasound.
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spelling pubmed-101384682023-04-28 An open-source framework for synthetic post-dive Doppler ultrasound audio generation Le, David Q. Hoang, Andrew H. Azarang, Arian Lance, Rachel M. Natoli, Michael Gatrell, Alan Blogg, S. Lesley Dayton, Paul A. Tillmans, Frauke Lindholm, Peter Moon, Richard E. Papadopoulou, Virginie PLoS One Research Article Doppler ultrasound (DU) measurements are used to detect and evaluate venous gas emboli (VGE) formed after decompression. Automated methodologies for assessing VGE presence using signal processing have been developed on varying real-world datasets of limited size and without ground truth values preventing objective evaluation. We develop and report a method to generate synthetic post-dive data using DU signals collected in both precordium and subclavian vein with varying degrees of bubbling matching field-standard grading metrics. This method is adaptable, modifiable, and reproducible, allowing for researchers to tune the produced dataset for their desired purpose. We provide the baseline Doppler recordings and code required to generate synthetic data for researchers to reproduce our work and improve upon it. We also provide a set of pre-made synthetic post-dive DU data spanning six scenarios representing the Spencer and Kisman-Masurel (KM) grading scales as well as precordial and subclavian DU recordings. By providing a method for synthetic post-dive DU data generation, we aim to improve and accelerate the development of signal processing techniques for VGE analysis in Doppler ultrasound. Public Library of Science 2023-04-27 /pmc/articles/PMC10138468/ /pubmed/37104279 http://dx.doi.org/10.1371/journal.pone.0284922 Text en © 2023 Le et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Le, David Q.
Hoang, Andrew H.
Azarang, Arian
Lance, Rachel M.
Natoli, Michael
Gatrell, Alan
Blogg, S. Lesley
Dayton, Paul A.
Tillmans, Frauke
Lindholm, Peter
Moon, Richard E.
Papadopoulou, Virginie
An open-source framework for synthetic post-dive Doppler ultrasound audio generation
title An open-source framework for synthetic post-dive Doppler ultrasound audio generation
title_full An open-source framework for synthetic post-dive Doppler ultrasound audio generation
title_fullStr An open-source framework for synthetic post-dive Doppler ultrasound audio generation
title_full_unstemmed An open-source framework for synthetic post-dive Doppler ultrasound audio generation
title_short An open-source framework for synthetic post-dive Doppler ultrasound audio generation
title_sort open-source framework for synthetic post-dive doppler ultrasound audio generation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138468/
https://www.ncbi.nlm.nih.gov/pubmed/37104279
http://dx.doi.org/10.1371/journal.pone.0284922
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