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Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis
Rheumatoid arthritis (RA) is a systemic autoimmune disease characterized by synovitis, joint damage and deformity. A newly described type of cell death, ferroptosis, has an important role in the pathogenesis of RA. However, the heterogeneity of ferroptosis and its association with the immune microen...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138921/ https://www.ncbi.nlm.nih.gov/pubmed/37108505 http://dx.doi.org/10.3390/ijms24087342 |
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author | Xie, Maosheng Zhu, Chao Ye, Yujin |
author_facet | Xie, Maosheng Zhu, Chao Ye, Yujin |
author_sort | Xie, Maosheng |
collection | PubMed |
description | Rheumatoid arthritis (RA) is a systemic autoimmune disease characterized by synovitis, joint damage and deformity. A newly described type of cell death, ferroptosis, has an important role in the pathogenesis of RA. However, the heterogeneity of ferroptosis and its association with the immune microenvironment in RA remain unknown. Synovial tissue samples from 154 RA patients and 32 healthy controls (HCs) were obtained from the Gene Expression Omnibus database. Twelve of twenty-six ferroptosis-related genes (FRGs) were differentially expressed between RA patients and HCs. Furthermore, the patterns of correlation among the FRGs were significantly different between the RA and HC groups. RA patients were classified into two distinct ferroptosis-related clusters, of which cluster 1 had a higher abundance of activated immune cells and a corresponding lower ferroptosis score. Enrichment analysis suggested that tumor necrosis factor-α signaling via nuclear factor-κB was upregulated in cluster 1. RA patients in cluster 1 responded better to anti-tumor necrosis factor (anti-TNF) therapy, which was verified by the GSE 198520 dataset. A diagnostic model to identify RA subtypes and immunity was constructed and verified, in which the area under the curve values in the training (70%) and validation (30%) cohorts were 0.849 and 0.810, respectively. This study demonstrated that there were two ferroptosis clusters in RA synovium that exhibited distinct immune profiles and ferroptosis sensitivity. Additionally, a gene scoring system was constructed to classify individual RA patients. |
format | Online Article Text |
id | pubmed-10138921 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101389212023-04-28 Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis Xie, Maosheng Zhu, Chao Ye, Yujin Int J Mol Sci Article Rheumatoid arthritis (RA) is a systemic autoimmune disease characterized by synovitis, joint damage and deformity. A newly described type of cell death, ferroptosis, has an important role in the pathogenesis of RA. However, the heterogeneity of ferroptosis and its association with the immune microenvironment in RA remain unknown. Synovial tissue samples from 154 RA patients and 32 healthy controls (HCs) were obtained from the Gene Expression Omnibus database. Twelve of twenty-six ferroptosis-related genes (FRGs) were differentially expressed between RA patients and HCs. Furthermore, the patterns of correlation among the FRGs were significantly different between the RA and HC groups. RA patients were classified into two distinct ferroptosis-related clusters, of which cluster 1 had a higher abundance of activated immune cells and a corresponding lower ferroptosis score. Enrichment analysis suggested that tumor necrosis factor-α signaling via nuclear factor-κB was upregulated in cluster 1. RA patients in cluster 1 responded better to anti-tumor necrosis factor (anti-TNF) therapy, which was verified by the GSE 198520 dataset. A diagnostic model to identify RA subtypes and immunity was constructed and verified, in which the area under the curve values in the training (70%) and validation (30%) cohorts were 0.849 and 0.810, respectively. This study demonstrated that there were two ferroptosis clusters in RA synovium that exhibited distinct immune profiles and ferroptosis sensitivity. Additionally, a gene scoring system was constructed to classify individual RA patients. MDPI 2023-04-16 /pmc/articles/PMC10138921/ /pubmed/37108505 http://dx.doi.org/10.3390/ijms24087342 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xie, Maosheng Zhu, Chao Ye, Yujin Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis |
title | Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis |
title_full | Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis |
title_fullStr | Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis |
title_full_unstemmed | Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis |
title_short | Ferroptosis-Related Molecular Clusters and Diagnostic Model in Rheumatoid Arthritis |
title_sort | ferroptosis-related molecular clusters and diagnostic model in rheumatoid arthritis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138921/ https://www.ncbi.nlm.nih.gov/pubmed/37108505 http://dx.doi.org/10.3390/ijms24087342 |
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