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Constraints on Knot Insertion, Not Internal Jamming, Control Polycatenane Translocation Dynamics through Crystalline Pores
[Image: see text] The translocation of polymers through pores and channels is an archetypal process in biology and is widely studied and exploited for applications in bio- and nanotechnology. In recent times, the translocation of polymers of various different topologies has been studied both experim...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141125/ https://www.ncbi.nlm.nih.gov/pubmed/37128623 http://dx.doi.org/10.1021/acs.macromol.2c02565 |
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author | Wang, Zifeng Ziolek, Robert M. Tsige, Mesfin |
author_facet | Wang, Zifeng Ziolek, Robert M. Tsige, Mesfin |
author_sort | Wang, Zifeng |
collection | PubMed |
description | [Image: see text] The translocation of polymers through pores and channels is an archetypal process in biology and is widely studied and exploited for applications in bio- and nanotechnology. In recent times, the translocation of polymers of various different topologies has been studied both experimentally and by computer simulation. However, in some cases, a clear understanding of the precise mechanisms that drive their translocation dynamics can be challenging to derive. Experimental methods are able to provide statistical details of polymer translocation, but computer simulations are uniquely placed to uncover a finer level of mechanistic understanding. In this work, we use high-throughput molecular simulations to reveal the importance that knot insertion rates play in controlling translocation dynamics in the small pore limit, where unexpected nonpower law behavior emerges. This work both provides new predictive understanding of polycatenane translocation and shows the importance of carefully considering the role of the definition of translocation itself. |
format | Online Article Text |
id | pubmed-10141125 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-101411252023-04-29 Constraints on Knot Insertion, Not Internal Jamming, Control Polycatenane Translocation Dynamics through Crystalline Pores Wang, Zifeng Ziolek, Robert M. Tsige, Mesfin Macromolecules [Image: see text] The translocation of polymers through pores and channels is an archetypal process in biology and is widely studied and exploited for applications in bio- and nanotechnology. In recent times, the translocation of polymers of various different topologies has been studied both experimentally and by computer simulation. However, in some cases, a clear understanding of the precise mechanisms that drive their translocation dynamics can be challenging to derive. Experimental methods are able to provide statistical details of polymer translocation, but computer simulations are uniquely placed to uncover a finer level of mechanistic understanding. In this work, we use high-throughput molecular simulations to reveal the importance that knot insertion rates play in controlling translocation dynamics in the small pore limit, where unexpected nonpower law behavior emerges. This work both provides new predictive understanding of polycatenane translocation and shows the importance of carefully considering the role of the definition of translocation itself. American Chemical Society 2023-04-10 /pmc/articles/PMC10141125/ /pubmed/37128623 http://dx.doi.org/10.1021/acs.macromol.2c02565 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Wang, Zifeng Ziolek, Robert M. Tsige, Mesfin Constraints on Knot Insertion, Not Internal Jamming, Control Polycatenane Translocation Dynamics through Crystalline Pores |
title | Constraints
on Knot Insertion, Not Internal Jamming,
Control Polycatenane Translocation Dynamics through Crystalline Pores |
title_full | Constraints
on Knot Insertion, Not Internal Jamming,
Control Polycatenane Translocation Dynamics through Crystalline Pores |
title_fullStr | Constraints
on Knot Insertion, Not Internal Jamming,
Control Polycatenane Translocation Dynamics through Crystalline Pores |
title_full_unstemmed | Constraints
on Knot Insertion, Not Internal Jamming,
Control Polycatenane Translocation Dynamics through Crystalline Pores |
title_short | Constraints
on Knot Insertion, Not Internal Jamming,
Control Polycatenane Translocation Dynamics through Crystalline Pores |
title_sort | constraints
on knot insertion, not internal jamming,
control polycatenane translocation dynamics through crystalline pores |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141125/ https://www.ncbi.nlm.nih.gov/pubmed/37128623 http://dx.doi.org/10.1021/acs.macromol.2c02565 |
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