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DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins

Viruses with rapid replication and easy mutation can become resistant to antiviral drug treatment. With novel viral infections emerging, such as the recent COVID-19 pandemic, novel antiviral therapies are urgently needed. Antiviral proteins, such as interferon, have been used for treating chronic he...

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Autores principales: Liu, Yanchao, Zhu, Youzhuo, Sun, Xin, Ma, Tianyue, Lao, Xingzhen, Zheng, Heng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141206/
https://www.ncbi.nlm.nih.gov/pubmed/37112801
http://dx.doi.org/10.3390/v15040820
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author Liu, Yanchao
Zhu, Youzhuo
Sun, Xin
Ma, Tianyue
Lao, Xingzhen
Zheng, Heng
author_facet Liu, Yanchao
Zhu, Youzhuo
Sun, Xin
Ma, Tianyue
Lao, Xingzhen
Zheng, Heng
author_sort Liu, Yanchao
collection PubMed
description Viruses with rapid replication and easy mutation can become resistant to antiviral drug treatment. With novel viral infections emerging, such as the recent COVID-19 pandemic, novel antiviral therapies are urgently needed. Antiviral proteins, such as interferon, have been used for treating chronic hepatitis C infections for decades. Natural-origin antimicrobial peptides, such as defensins, have also been identified as possessing antiviral activities, including direct antiviral effects and the ability to induce indirect immune responses to viruses. To promote the development of antiviral drugs, we constructed a data repository of antiviral peptides and proteins (DRAVP). The database provides general information, antiviral activity, structure information, physicochemical information, and literature information for peptides and proteins. Because most of the proteins and peptides lack experimentally determined structures, AlphaFold was used to predict each antiviral peptide’s structure. A free website for users (http://dravp.cpu-bioinfor.org/, accessed on 30 August 2022) was constructed to facilitate data retrieval and sequence analysis. Additionally, all the data can be accessed from the web interface. The DRAVP database aims to be a useful resource for developing antiviral drugs.
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spelling pubmed-101412062023-04-29 DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins Liu, Yanchao Zhu, Youzhuo Sun, Xin Ma, Tianyue Lao, Xingzhen Zheng, Heng Viruses Article Viruses with rapid replication and easy mutation can become resistant to antiviral drug treatment. With novel viral infections emerging, such as the recent COVID-19 pandemic, novel antiviral therapies are urgently needed. Antiviral proteins, such as interferon, have been used for treating chronic hepatitis C infections for decades. Natural-origin antimicrobial peptides, such as defensins, have also been identified as possessing antiviral activities, including direct antiviral effects and the ability to induce indirect immune responses to viruses. To promote the development of antiviral drugs, we constructed a data repository of antiviral peptides and proteins (DRAVP). The database provides general information, antiviral activity, structure information, physicochemical information, and literature information for peptides and proteins. Because most of the proteins and peptides lack experimentally determined structures, AlphaFold was used to predict each antiviral peptide’s structure. A free website for users (http://dravp.cpu-bioinfor.org/, accessed on 30 August 2022) was constructed to facilitate data retrieval and sequence analysis. Additionally, all the data can be accessed from the web interface. The DRAVP database aims to be a useful resource for developing antiviral drugs. MDPI 2023-03-23 /pmc/articles/PMC10141206/ /pubmed/37112801 http://dx.doi.org/10.3390/v15040820 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Yanchao
Zhu, Youzhuo
Sun, Xin
Ma, Tianyue
Lao, Xingzhen
Zheng, Heng
DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins
title DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins
title_full DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins
title_fullStr DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins
title_full_unstemmed DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins
title_short DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins
title_sort dravp: a comprehensive database of antiviral peptides and proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141206/
https://www.ncbi.nlm.nih.gov/pubmed/37112801
http://dx.doi.org/10.3390/v15040820
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