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Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
BACKGROUND: The COVID-19 pandemic has highlighted the role of infectious disease forecasting in informing public policy. However, significant barriers remain for effectively linking infectious disease forecasts to public health decision making, including a lack of model validation. Forecasting model...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141909/ https://www.ncbi.nlm.nih.gov/pubmed/37118796 http://dx.doi.org/10.1186/s12889-023-15649-0 |
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author | White, Lauren A. McCorvie, Ryan Crow, David Jain, Seema León, Tomás M. |
author_facet | White, Lauren A. McCorvie, Ryan Crow, David Jain, Seema León, Tomás M. |
author_sort | White, Lauren A. |
collection | PubMed |
description | BACKGROUND: The COVID-19 pandemic has highlighted the role of infectious disease forecasting in informing public policy. However, significant barriers remain for effectively linking infectious disease forecasts to public health decision making, including a lack of model validation. Forecasting model performance and accuracy should be evaluated retrospectively to understand under which conditions models were reliable and could be improved in the future. METHODS: Using archived forecasts from the California Department of Public Health’s California COVID Assessment Tool (https://calcat.covid19.ca.gov/cacovidmodels/), we compared how well different forecasting models predicted COVID-19 hospitalization census across California counties and regions during periods of Alpha, Delta, and Omicron variant predominance. RESULTS: Based on mean absolute error estimates, forecasting models had variable performance across counties and through time. When accounting for model availability across counties and dates, some individual models performed consistently better than the ensemble model, but model rankings still differed across counties. Local transmission trends, variant prevalence, and county population size were informative predictors for determining which model performed best for a given county based on a random forest classification analysis. Overall, the ensemble model performed worse in less populous counties, in part because of fewer model contributors in these locations. CONCLUSIONS: Ensemble model predictions could be improved by incorporating geographic heterogeneity in model coverage and performance. Consistency in model reporting and improved model validation can strengthen the role of infectious disease forecasting in real-time public health decision making. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12889-023-15649-0. |
format | Online Article Text |
id | pubmed-10141909 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-101419092023-04-29 Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making White, Lauren A. McCorvie, Ryan Crow, David Jain, Seema León, Tomás M. BMC Public Health Research BACKGROUND: The COVID-19 pandemic has highlighted the role of infectious disease forecasting in informing public policy. However, significant barriers remain for effectively linking infectious disease forecasts to public health decision making, including a lack of model validation. Forecasting model performance and accuracy should be evaluated retrospectively to understand under which conditions models were reliable and could be improved in the future. METHODS: Using archived forecasts from the California Department of Public Health’s California COVID Assessment Tool (https://calcat.covid19.ca.gov/cacovidmodels/), we compared how well different forecasting models predicted COVID-19 hospitalization census across California counties and regions during periods of Alpha, Delta, and Omicron variant predominance. RESULTS: Based on mean absolute error estimates, forecasting models had variable performance across counties and through time. When accounting for model availability across counties and dates, some individual models performed consistently better than the ensemble model, but model rankings still differed across counties. Local transmission trends, variant prevalence, and county population size were informative predictors for determining which model performed best for a given county based on a random forest classification analysis. Overall, the ensemble model performed worse in less populous counties, in part because of fewer model contributors in these locations. CONCLUSIONS: Ensemble model predictions could be improved by incorporating geographic heterogeneity in model coverage and performance. Consistency in model reporting and improved model validation can strengthen the role of infectious disease forecasting in real-time public health decision making. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12889-023-15649-0. BioMed Central 2023-04-28 /pmc/articles/PMC10141909/ /pubmed/37118796 http://dx.doi.org/10.1186/s12889-023-15649-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research White, Lauren A. McCorvie, Ryan Crow, David Jain, Seema León, Tomás M. Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making |
title | Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making |
title_full | Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making |
title_fullStr | Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making |
title_full_unstemmed | Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making |
title_short | Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making |
title_sort | assessing the accuracy of california county level covid-19 hospitalization forecasts to inform public policy decision making |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141909/ https://www.ncbi.nlm.nih.gov/pubmed/37118796 http://dx.doi.org/10.1186/s12889-023-15649-0 |
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