Cargando…

Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making

BACKGROUND: The COVID-19 pandemic has highlighted the role of infectious disease forecasting in informing public policy. However, significant barriers remain for effectively linking infectious disease forecasts to public health decision making, including a lack of model validation. Forecasting model...

Descripción completa

Detalles Bibliográficos
Autores principales: White, Lauren A., McCorvie, Ryan, Crow, David, Jain, Seema, León, Tomás M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141909/
https://www.ncbi.nlm.nih.gov/pubmed/37118796
http://dx.doi.org/10.1186/s12889-023-15649-0
_version_ 1785033487321923584
author White, Lauren A.
McCorvie, Ryan
Crow, David
Jain, Seema
León, Tomás M.
author_facet White, Lauren A.
McCorvie, Ryan
Crow, David
Jain, Seema
León, Tomás M.
author_sort White, Lauren A.
collection PubMed
description BACKGROUND: The COVID-19 pandemic has highlighted the role of infectious disease forecasting in informing public policy. However, significant barriers remain for effectively linking infectious disease forecasts to public health decision making, including a lack of model validation. Forecasting model performance and accuracy should be evaluated retrospectively to understand under which conditions models were reliable and could be improved in the future. METHODS: Using archived forecasts from the California Department of Public Health’s California COVID Assessment Tool (https://calcat.covid19.ca.gov/cacovidmodels/), we compared how well different forecasting models predicted COVID-19 hospitalization census across California counties and regions during periods of Alpha, Delta, and Omicron variant predominance. RESULTS: Based on mean absolute error estimates, forecasting models had variable performance across counties and through time. When accounting for model availability across counties and dates, some individual models performed consistently better than the ensemble model, but model rankings still differed across counties. Local transmission trends, variant prevalence, and county population size were informative predictors for determining which model performed best for a given county based on a random forest classification analysis. Overall, the ensemble model performed worse in less populous counties, in part because of fewer model contributors in these locations. CONCLUSIONS: Ensemble model predictions could be improved by incorporating geographic heterogeneity in model coverage and performance. Consistency in model reporting and improved model validation can strengthen the role of infectious disease forecasting in real-time public health decision making. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12889-023-15649-0.
format Online
Article
Text
id pubmed-10141909
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-101419092023-04-29 Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making White, Lauren A. McCorvie, Ryan Crow, David Jain, Seema León, Tomás M. BMC Public Health Research BACKGROUND: The COVID-19 pandemic has highlighted the role of infectious disease forecasting in informing public policy. However, significant barriers remain for effectively linking infectious disease forecasts to public health decision making, including a lack of model validation. Forecasting model performance and accuracy should be evaluated retrospectively to understand under which conditions models were reliable and could be improved in the future. METHODS: Using archived forecasts from the California Department of Public Health’s California COVID Assessment Tool (https://calcat.covid19.ca.gov/cacovidmodels/), we compared how well different forecasting models predicted COVID-19 hospitalization census across California counties and regions during periods of Alpha, Delta, and Omicron variant predominance. RESULTS: Based on mean absolute error estimates, forecasting models had variable performance across counties and through time. When accounting for model availability across counties and dates, some individual models performed consistently better than the ensemble model, but model rankings still differed across counties. Local transmission trends, variant prevalence, and county population size were informative predictors for determining which model performed best for a given county based on a random forest classification analysis. Overall, the ensemble model performed worse in less populous counties, in part because of fewer model contributors in these locations. CONCLUSIONS: Ensemble model predictions could be improved by incorporating geographic heterogeneity in model coverage and performance. Consistency in model reporting and improved model validation can strengthen the role of infectious disease forecasting in real-time public health decision making. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12889-023-15649-0. BioMed Central 2023-04-28 /pmc/articles/PMC10141909/ /pubmed/37118796 http://dx.doi.org/10.1186/s12889-023-15649-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
White, Lauren A.
McCorvie, Ryan
Crow, David
Jain, Seema
León, Tomás M.
Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
title Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
title_full Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
title_fullStr Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
title_full_unstemmed Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
title_short Assessing the accuracy of California county level COVID-19 hospitalization forecasts to inform public policy decision making
title_sort assessing the accuracy of california county level covid-19 hospitalization forecasts to inform public policy decision making
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141909/
https://www.ncbi.nlm.nih.gov/pubmed/37118796
http://dx.doi.org/10.1186/s12889-023-15649-0
work_keys_str_mv AT whitelaurena assessingtheaccuracyofcaliforniacountylevelcovid19hospitalizationforecaststoinformpublicpolicydecisionmaking
AT mccorvieryan assessingtheaccuracyofcaliforniacountylevelcovid19hospitalizationforecaststoinformpublicpolicydecisionmaking
AT crowdavid assessingtheaccuracyofcaliforniacountylevelcovid19hospitalizationforecaststoinformpublicpolicydecisionmaking
AT jainseema assessingtheaccuracyofcaliforniacountylevelcovid19hospitalizationforecaststoinformpublicpolicydecisionmaking
AT leontomasm assessingtheaccuracyofcaliforniacountylevelcovid19hospitalizationforecaststoinformpublicpolicydecisionmaking