Cargando…
A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer
Breast cancer (BC) is among the most universal malignant tumors in women worldwide. Aging is a complex phenomenon, caused by a variety of factors, that plays a significant role in tumor development. Consequently, it is crucial to screen for prognostic aging-related long non-coding RNAs (lncRNAs) in...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141963/ https://www.ncbi.nlm.nih.gov/pubmed/37110517 http://dx.doi.org/10.3390/molecules28083283 |
_version_ | 1785033498052001792 |
---|---|
author | Liu, Zhixin Ren, Chongkang Cai, Jinyi Yin, Baohui Yuan, Jingjie Ding, Rongjuan Ming, Wenzhuo Sun, Yunxiao Li, Youjie |
author_facet | Liu, Zhixin Ren, Chongkang Cai, Jinyi Yin, Baohui Yuan, Jingjie Ding, Rongjuan Ming, Wenzhuo Sun, Yunxiao Li, Youjie |
author_sort | Liu, Zhixin |
collection | PubMed |
description | Breast cancer (BC) is among the most universal malignant tumors in women worldwide. Aging is a complex phenomenon, caused by a variety of factors, that plays a significant role in tumor development. Consequently, it is crucial to screen for prognostic aging-related long non-coding RNAs (lncRNAs) in BC. The BC samples from the breast-invasive carcinoma cohort were downloaded from The Cancer Genome Atlas (TCGA) database. The differential expression of aging-related lncRNAs (DEarlncRNAs) was screened by Pearson correlation analysis. Univariate Cox regression, LASSO–Cox analysis, and multivariate Cox analysis were performed to construct an aging-related lncRNA signature. The signature was validated in the GSE20685 dataset from the Gene Expression Omnibus (GEO) database. Subsequently, a nomogram was constructed to predict survival in BC patients. The accuracy of prediction performance was assessed through the time-dependent receiver operating characteristic (ROC) curves, Kaplan–Meier analysis, principal component analyses, decision curve analysis, calibration curve, and concordance index. Finally, differences in tumor mutational burden, tumor-infiltrating immune cells, and patients’ response to chemotherapy and immunotherapy between the high- and low-risk score groups were explored. Analysis of the TCGA cohort revealed a six aging-related lncRNA signature consisting of MCF2L-AS1, USP30-AS1, OTUD6B-AS1, MAPT-AS1, PRR34-AS1, and DLGAP1-AS1. The time-dependent ROC curve proved the optimal predictability for prognosis in BC patients with areas under curves (AUCs) of 0.753, 0.772, and 0.722 in 1, 3, and 5 years, respectively. Patients in the low-risk group had better overall survival and significantly lower total tumor mutational burden. Meanwhile, the high-risk group had a lower proportion of tumor-killing immune cells. The low-risk group could benefit more from immunotherapy and some chemotherapeutics than the high-risk group. The aging-related lncRNA signature can provide new perspectives and methods for early BC diagnosis and therapeutic targets, especially tumor immunotherapy. |
format | Online Article Text |
id | pubmed-10141963 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101419632023-04-29 A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer Liu, Zhixin Ren, Chongkang Cai, Jinyi Yin, Baohui Yuan, Jingjie Ding, Rongjuan Ming, Wenzhuo Sun, Yunxiao Li, Youjie Molecules Article Breast cancer (BC) is among the most universal malignant tumors in women worldwide. Aging is a complex phenomenon, caused by a variety of factors, that plays a significant role in tumor development. Consequently, it is crucial to screen for prognostic aging-related long non-coding RNAs (lncRNAs) in BC. The BC samples from the breast-invasive carcinoma cohort were downloaded from The Cancer Genome Atlas (TCGA) database. The differential expression of aging-related lncRNAs (DEarlncRNAs) was screened by Pearson correlation analysis. Univariate Cox regression, LASSO–Cox analysis, and multivariate Cox analysis were performed to construct an aging-related lncRNA signature. The signature was validated in the GSE20685 dataset from the Gene Expression Omnibus (GEO) database. Subsequently, a nomogram was constructed to predict survival in BC patients. The accuracy of prediction performance was assessed through the time-dependent receiver operating characteristic (ROC) curves, Kaplan–Meier analysis, principal component analyses, decision curve analysis, calibration curve, and concordance index. Finally, differences in tumor mutational burden, tumor-infiltrating immune cells, and patients’ response to chemotherapy and immunotherapy between the high- and low-risk score groups were explored. Analysis of the TCGA cohort revealed a six aging-related lncRNA signature consisting of MCF2L-AS1, USP30-AS1, OTUD6B-AS1, MAPT-AS1, PRR34-AS1, and DLGAP1-AS1. The time-dependent ROC curve proved the optimal predictability for prognosis in BC patients with areas under curves (AUCs) of 0.753, 0.772, and 0.722 in 1, 3, and 5 years, respectively. Patients in the low-risk group had better overall survival and significantly lower total tumor mutational burden. Meanwhile, the high-risk group had a lower proportion of tumor-killing immune cells. The low-risk group could benefit more from immunotherapy and some chemotherapeutics than the high-risk group. The aging-related lncRNA signature can provide new perspectives and methods for early BC diagnosis and therapeutic targets, especially tumor immunotherapy. MDPI 2023-04-07 /pmc/articles/PMC10141963/ /pubmed/37110517 http://dx.doi.org/10.3390/molecules28083283 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Liu, Zhixin Ren, Chongkang Cai, Jinyi Yin, Baohui Yuan, Jingjie Ding, Rongjuan Ming, Wenzhuo Sun, Yunxiao Li, Youjie A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer |
title | A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer |
title_full | A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer |
title_fullStr | A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer |
title_full_unstemmed | A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer |
title_short | A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer |
title_sort | novel aging-related prognostic lncrna signature correlated with immune cell infiltration and response to immunotherapy in breast cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141963/ https://www.ncbi.nlm.nih.gov/pubmed/37110517 http://dx.doi.org/10.3390/molecules28083283 |
work_keys_str_mv | AT liuzhixin anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT renchongkang anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT caijinyi anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT yinbaohui anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT yuanjingjie anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT dingrongjuan anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT mingwenzhuo anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT sunyunxiao anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT liyoujie anovelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT liuzhixin novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT renchongkang novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT caijinyi novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT yinbaohui novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT yuanjingjie novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT dingrongjuan novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT mingwenzhuo novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT sunyunxiao novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer AT liyoujie novelagingrelatedprognosticlncrnasignaturecorrelatedwithimmunecellinfiltrationandresponsetoimmunotherapyinbreastcancer |