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CORAL Models for Drug-Induced Nephrotoxicity

Drug-induced nephrotoxicity is a major cause of kidney dysfunction with potentially fatal consequences. The poor prediction of clinical responses based on preclinical research hampers the development of new pharmaceuticals. This emphasises the need for new methods for earlier and more accurate diagn...

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Autores principales: Toropov, Andrey A., Barnes, Devon A., Toropova, Alla P., Roncaglioni, Alessandra, Irvine, Alasdair R., Masereeuw, Rosalinde, Benfenati, Emilio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10142465/
https://www.ncbi.nlm.nih.gov/pubmed/37112520
http://dx.doi.org/10.3390/toxics11040293
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author Toropov, Andrey A.
Barnes, Devon A.
Toropova, Alla P.
Roncaglioni, Alessandra
Irvine, Alasdair R.
Masereeuw, Rosalinde
Benfenati, Emilio
author_facet Toropov, Andrey A.
Barnes, Devon A.
Toropova, Alla P.
Roncaglioni, Alessandra
Irvine, Alasdair R.
Masereeuw, Rosalinde
Benfenati, Emilio
author_sort Toropov, Andrey A.
collection PubMed
description Drug-induced nephrotoxicity is a major cause of kidney dysfunction with potentially fatal consequences. The poor prediction of clinical responses based on preclinical research hampers the development of new pharmaceuticals. This emphasises the need for new methods for earlier and more accurate diagnosis to avoid drug-induced kidney injuries. Computational predictions of drug-induced nephrotoxicity are an attractive approach to facilitate such an assessment and such models could serve as robust and reliable replacements for animal testing. To provide the chemical information for computational prediction, we used the convenient and common SMILES format. We examined several versions of so-called optimal SMILES-based descriptors. We obtained the highest statistical values, considering the specificity, sensitivity and accuracy of the prediction, by applying recently suggested atoms pairs proportions vectors and the index of ideality of correlation, which is a special statistical measure of the predictive potential. Implementation of this tool in the drug development process might lead to safer drugs in the future.
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spelling pubmed-101424652023-04-29 CORAL Models for Drug-Induced Nephrotoxicity Toropov, Andrey A. Barnes, Devon A. Toropova, Alla P. Roncaglioni, Alessandra Irvine, Alasdair R. Masereeuw, Rosalinde Benfenati, Emilio Toxics Article Drug-induced nephrotoxicity is a major cause of kidney dysfunction with potentially fatal consequences. The poor prediction of clinical responses based on preclinical research hampers the development of new pharmaceuticals. This emphasises the need for new methods for earlier and more accurate diagnosis to avoid drug-induced kidney injuries. Computational predictions of drug-induced nephrotoxicity are an attractive approach to facilitate such an assessment and such models could serve as robust and reliable replacements for animal testing. To provide the chemical information for computational prediction, we used the convenient and common SMILES format. We examined several versions of so-called optimal SMILES-based descriptors. We obtained the highest statistical values, considering the specificity, sensitivity and accuracy of the prediction, by applying recently suggested atoms pairs proportions vectors and the index of ideality of correlation, which is a special statistical measure of the predictive potential. Implementation of this tool in the drug development process might lead to safer drugs in the future. MDPI 2023-03-23 /pmc/articles/PMC10142465/ /pubmed/37112520 http://dx.doi.org/10.3390/toxics11040293 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Toropov, Andrey A.
Barnes, Devon A.
Toropova, Alla P.
Roncaglioni, Alessandra
Irvine, Alasdair R.
Masereeuw, Rosalinde
Benfenati, Emilio
CORAL Models for Drug-Induced Nephrotoxicity
title CORAL Models for Drug-Induced Nephrotoxicity
title_full CORAL Models for Drug-Induced Nephrotoxicity
title_fullStr CORAL Models for Drug-Induced Nephrotoxicity
title_full_unstemmed CORAL Models for Drug-Induced Nephrotoxicity
title_short CORAL Models for Drug-Induced Nephrotoxicity
title_sort coral models for drug-induced nephrotoxicity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10142465/
https://www.ncbi.nlm.nih.gov/pubmed/37112520
http://dx.doi.org/10.3390/toxics11040293
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