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Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine

Pharmacometrics and the utilization of population pharmacokinetics play an integral role in model-informed drug discovery and development (MIDD). Recently, there has been a growth in the application of deep learning approaches to aid in areas within MIDD. In this study, a deep learning model, LSTM-A...

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Autores principales: Khusial, Richard, Bies, Robert R., Akil, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10145228/
https://www.ncbi.nlm.nih.gov/pubmed/37111625
http://dx.doi.org/10.3390/pharmaceutics15041139
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author Khusial, Richard
Bies, Robert R.
Akil, Ayman
author_facet Khusial, Richard
Bies, Robert R.
Akil, Ayman
author_sort Khusial, Richard
collection PubMed
description Pharmacometrics and the utilization of population pharmacokinetics play an integral role in model-informed drug discovery and development (MIDD). Recently, there has been a growth in the application of deep learning approaches to aid in areas within MIDD. In this study, a deep learning model, LSTM-ANN, was developed to predict olanzapine drug concentrations from the CATIE study. A total of 1527 olanzapine drug concentrations from 523 individuals along with 11 patient-specific covariates were used in model development. The hyperparameters of the LSTM-ANN model were optimized through a Bayesian optimization algorithm. A population pharmacokinetic model using the NONMEM model was constructed as a reference to compare to the performance of the LSTM-ANN model. The RMSE of the LSTM-ANN model was 29.566 in the validation set, while the RMSE of the NONMEM model was 31.129. Permutation importance revealed that age, sex, and smoking were highly influential covariates in the LSTM-ANN model. The LSTM-ANN model showed potential in the application of drug concentration predictions as it was able to capture the relationships within a sparsely sampled pharmacokinetic dataset and perform comparably to the NONMEM model.
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spelling pubmed-101452282023-04-29 Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine Khusial, Richard Bies, Robert R. Akil, Ayman Pharmaceutics Article Pharmacometrics and the utilization of population pharmacokinetics play an integral role in model-informed drug discovery and development (MIDD). Recently, there has been a growth in the application of deep learning approaches to aid in areas within MIDD. In this study, a deep learning model, LSTM-ANN, was developed to predict olanzapine drug concentrations from the CATIE study. A total of 1527 olanzapine drug concentrations from 523 individuals along with 11 patient-specific covariates were used in model development. The hyperparameters of the LSTM-ANN model were optimized through a Bayesian optimization algorithm. A population pharmacokinetic model using the NONMEM model was constructed as a reference to compare to the performance of the LSTM-ANN model. The RMSE of the LSTM-ANN model was 29.566 in the validation set, while the RMSE of the NONMEM model was 31.129. Permutation importance revealed that age, sex, and smoking were highly influential covariates in the LSTM-ANN model. The LSTM-ANN model showed potential in the application of drug concentration predictions as it was able to capture the relationships within a sparsely sampled pharmacokinetic dataset and perform comparably to the NONMEM model. MDPI 2023-04-04 /pmc/articles/PMC10145228/ /pubmed/37111625 http://dx.doi.org/10.3390/pharmaceutics15041139 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Khusial, Richard
Bies, Robert R.
Akil, Ayman
Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine
title Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine
title_full Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine
title_fullStr Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine
title_full_unstemmed Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine
title_short Deep Learning Methods Applied to Drug Concentration Prediction of Olanzapine
title_sort deep learning methods applied to drug concentration prediction of olanzapine
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10145228/
https://www.ncbi.nlm.nih.gov/pubmed/37111625
http://dx.doi.org/10.3390/pharmaceutics15041139
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