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Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions

Late blight, caused by Phytophthora infestans, is a major disease of the potato crop with a strong negative impact on tuber yield and tuber quality. The control of late blight in conventional potato production systems is often through weekly application of prophylactic fungicides, moving away from a...

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Autores principales: Meno, Laura, Escuredo, Olga, Abuley, Isaac K., Seijo, M. Carmen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10146589/
https://www.ncbi.nlm.nih.gov/pubmed/37112159
http://dx.doi.org/10.3390/s23083818
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author Meno, Laura
Escuredo, Olga
Abuley, Isaac K.
Seijo, M. Carmen
author_facet Meno, Laura
Escuredo, Olga
Abuley, Isaac K.
Seijo, M. Carmen
author_sort Meno, Laura
collection PubMed
description Late blight, caused by Phytophthora infestans, is a major disease of the potato crop with a strong negative impact on tuber yield and tuber quality. The control of late blight in conventional potato production systems is often through weekly application of prophylactic fungicides, moving away from a sustainable production system. In support of integrated pest management practices, machine learning algorithms were proposed as tools to forecast aerobiological risk level (ARL) of Phytophthora infestans (>10 sporangia/m(3)) as inoculum to new infections. For this, meteorological and aerobiological data were monitored during five potato crop seasons in Galicia (northwest Spain). Mild temperatures (T) and high relative humidity (RH) were predominant during the foliar development (FD), coinciding with higher presence of sporangia in this phenological stage. The infection pressure (IP), wind, escape or leaf wetness (LW) of the same day also were significantly correlated with sporangia according to Spearman’s correlation test. ML algorithms such as random forest (RF) and C5.0 decision tree (C5.0) were successfully used to predict daily sporangia levels, with an accuracy of the models of 87% and 85%, respectively. Currently, existing late blight forecasting systems assume a constant presence of critical inoculum. Therefore, ML algorithms offer the possibility of predicting critical levels of Phytophthora infestans concentration. The inclusion of this type of information in forecasting systems would increase the exactitude in the estimation of the sporangia of this potato pathogen.
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spelling pubmed-101465892023-04-29 Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions Meno, Laura Escuredo, Olga Abuley, Isaac K. Seijo, M. Carmen Sensors (Basel) Article Late blight, caused by Phytophthora infestans, is a major disease of the potato crop with a strong negative impact on tuber yield and tuber quality. The control of late blight in conventional potato production systems is often through weekly application of prophylactic fungicides, moving away from a sustainable production system. In support of integrated pest management practices, machine learning algorithms were proposed as tools to forecast aerobiological risk level (ARL) of Phytophthora infestans (>10 sporangia/m(3)) as inoculum to new infections. For this, meteorological and aerobiological data were monitored during five potato crop seasons in Galicia (northwest Spain). Mild temperatures (T) and high relative humidity (RH) were predominant during the foliar development (FD), coinciding with higher presence of sporangia in this phenological stage. The infection pressure (IP), wind, escape or leaf wetness (LW) of the same day also were significantly correlated with sporangia according to Spearman’s correlation test. ML algorithms such as random forest (RF) and C5.0 decision tree (C5.0) were successfully used to predict daily sporangia levels, with an accuracy of the models of 87% and 85%, respectively. Currently, existing late blight forecasting systems assume a constant presence of critical inoculum. Therefore, ML algorithms offer the possibility of predicting critical levels of Phytophthora infestans concentration. The inclusion of this type of information in forecasting systems would increase the exactitude in the estimation of the sporangia of this potato pathogen. MDPI 2023-04-08 /pmc/articles/PMC10146589/ /pubmed/37112159 http://dx.doi.org/10.3390/s23083818 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Meno, Laura
Escuredo, Olga
Abuley, Isaac K.
Seijo, M. Carmen
Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
title Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
title_full Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
title_fullStr Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
title_full_unstemmed Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
title_short Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
title_sort predicting daily aerobiological risk level of potato late blight using c5.0 and random forest algorithms under field conditions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10146589/
https://www.ncbi.nlm.nih.gov/pubmed/37112159
http://dx.doi.org/10.3390/s23083818
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