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Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions
Late blight, caused by Phytophthora infestans, is a major disease of the potato crop with a strong negative impact on tuber yield and tuber quality. The control of late blight in conventional potato production systems is often through weekly application of prophylactic fungicides, moving away from a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10146589/ https://www.ncbi.nlm.nih.gov/pubmed/37112159 http://dx.doi.org/10.3390/s23083818 |
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author | Meno, Laura Escuredo, Olga Abuley, Isaac K. Seijo, M. Carmen |
author_facet | Meno, Laura Escuredo, Olga Abuley, Isaac K. Seijo, M. Carmen |
author_sort | Meno, Laura |
collection | PubMed |
description | Late blight, caused by Phytophthora infestans, is a major disease of the potato crop with a strong negative impact on tuber yield and tuber quality. The control of late blight in conventional potato production systems is often through weekly application of prophylactic fungicides, moving away from a sustainable production system. In support of integrated pest management practices, machine learning algorithms were proposed as tools to forecast aerobiological risk level (ARL) of Phytophthora infestans (>10 sporangia/m(3)) as inoculum to new infections. For this, meteorological and aerobiological data were monitored during five potato crop seasons in Galicia (northwest Spain). Mild temperatures (T) and high relative humidity (RH) were predominant during the foliar development (FD), coinciding with higher presence of sporangia in this phenological stage. The infection pressure (IP), wind, escape or leaf wetness (LW) of the same day also were significantly correlated with sporangia according to Spearman’s correlation test. ML algorithms such as random forest (RF) and C5.0 decision tree (C5.0) were successfully used to predict daily sporangia levels, with an accuracy of the models of 87% and 85%, respectively. Currently, existing late blight forecasting systems assume a constant presence of critical inoculum. Therefore, ML algorithms offer the possibility of predicting critical levels of Phytophthora infestans concentration. The inclusion of this type of information in forecasting systems would increase the exactitude in the estimation of the sporangia of this potato pathogen. |
format | Online Article Text |
id | pubmed-10146589 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101465892023-04-29 Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions Meno, Laura Escuredo, Olga Abuley, Isaac K. Seijo, M. Carmen Sensors (Basel) Article Late blight, caused by Phytophthora infestans, is a major disease of the potato crop with a strong negative impact on tuber yield and tuber quality. The control of late blight in conventional potato production systems is often through weekly application of prophylactic fungicides, moving away from a sustainable production system. In support of integrated pest management practices, machine learning algorithms were proposed as tools to forecast aerobiological risk level (ARL) of Phytophthora infestans (>10 sporangia/m(3)) as inoculum to new infections. For this, meteorological and aerobiological data were monitored during five potato crop seasons in Galicia (northwest Spain). Mild temperatures (T) and high relative humidity (RH) were predominant during the foliar development (FD), coinciding with higher presence of sporangia in this phenological stage. The infection pressure (IP), wind, escape or leaf wetness (LW) of the same day also were significantly correlated with sporangia according to Spearman’s correlation test. ML algorithms such as random forest (RF) and C5.0 decision tree (C5.0) were successfully used to predict daily sporangia levels, with an accuracy of the models of 87% and 85%, respectively. Currently, existing late blight forecasting systems assume a constant presence of critical inoculum. Therefore, ML algorithms offer the possibility of predicting critical levels of Phytophthora infestans concentration. The inclusion of this type of information in forecasting systems would increase the exactitude in the estimation of the sporangia of this potato pathogen. MDPI 2023-04-08 /pmc/articles/PMC10146589/ /pubmed/37112159 http://dx.doi.org/10.3390/s23083818 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Meno, Laura Escuredo, Olga Abuley, Isaac K. Seijo, M. Carmen Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions |
title | Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions |
title_full | Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions |
title_fullStr | Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions |
title_full_unstemmed | Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions |
title_short | Predicting Daily Aerobiological Risk Level of Potato Late Blight Using C5.0 and Random Forest Algorithms under Field Conditions |
title_sort | predicting daily aerobiological risk level of potato late blight using c5.0 and random forest algorithms under field conditions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10146589/ https://www.ncbi.nlm.nih.gov/pubmed/37112159 http://dx.doi.org/10.3390/s23083818 |
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