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Throwing and manipulating and cheating with a DNA nano-dice

Artificial molecular machines have captured the imagination of researchers, given their clear potential to mimic and influence human life. Key to behavior simulation is to reproduce the specific properties of physical or abstract systems. Dice throwing, as a stochastic model, is commonly used for re...

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Autores principales: Tang, Xiaochen, Chen, Tianshu, Li, Wenxing, Mao, Dongsheng, Liu, Chenbin, Wu, Qi, Huang, Nan, Hu, Song, Sun, Fenyong, Pan, Qiuhui, Zhu, Xiaoli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10147716/
https://www.ncbi.nlm.nih.gov/pubmed/37117228
http://dx.doi.org/10.1038/s41467-023-38164-7
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author Tang, Xiaochen
Chen, Tianshu
Li, Wenxing
Mao, Dongsheng
Liu, Chenbin
Wu, Qi
Huang, Nan
Hu, Song
Sun, Fenyong
Pan, Qiuhui
Zhu, Xiaoli
author_facet Tang, Xiaochen
Chen, Tianshu
Li, Wenxing
Mao, Dongsheng
Liu, Chenbin
Wu, Qi
Huang, Nan
Hu, Song
Sun, Fenyong
Pan, Qiuhui
Zhu, Xiaoli
author_sort Tang, Xiaochen
collection PubMed
description Artificial molecular machines have captured the imagination of researchers, given their clear potential to mimic and influence human life. Key to behavior simulation is to reproduce the specific properties of physical or abstract systems. Dice throwing, as a stochastic model, is commonly used for result judgment or plan decision in real life. In this perspective we utilize DNA cube framework for the design of a dice device at the nanoscale to reproduce probabilistic events in different situations: equal probability, high probability, and low probability. We first discuss the randomness of DNA cube, or dice, adsorbing on graphene oxide, or table, and then explore a series of events that change the probability through the way in which the energy released from entropy-driven strand displacement reactions or changes in intermolecular forces. As such, the DNA nano-dice system provides guideline and possibilities for the design, engineering, and quantification of behavioral probability simulation, a currently emerging area of molecular simulation research.
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spelling pubmed-101477162023-04-30 Throwing and manipulating and cheating with a DNA nano-dice Tang, Xiaochen Chen, Tianshu Li, Wenxing Mao, Dongsheng Liu, Chenbin Wu, Qi Huang, Nan Hu, Song Sun, Fenyong Pan, Qiuhui Zhu, Xiaoli Nat Commun Article Artificial molecular machines have captured the imagination of researchers, given their clear potential to mimic and influence human life. Key to behavior simulation is to reproduce the specific properties of physical or abstract systems. Dice throwing, as a stochastic model, is commonly used for result judgment or plan decision in real life. In this perspective we utilize DNA cube framework for the design of a dice device at the nanoscale to reproduce probabilistic events in different situations: equal probability, high probability, and low probability. We first discuss the randomness of DNA cube, or dice, adsorbing on graphene oxide, or table, and then explore a series of events that change the probability through the way in which the energy released from entropy-driven strand displacement reactions or changes in intermolecular forces. As such, the DNA nano-dice system provides guideline and possibilities for the design, engineering, and quantification of behavioral probability simulation, a currently emerging area of molecular simulation research. Nature Publishing Group UK 2023-04-28 /pmc/articles/PMC10147716/ /pubmed/37117228 http://dx.doi.org/10.1038/s41467-023-38164-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Tang, Xiaochen
Chen, Tianshu
Li, Wenxing
Mao, Dongsheng
Liu, Chenbin
Wu, Qi
Huang, Nan
Hu, Song
Sun, Fenyong
Pan, Qiuhui
Zhu, Xiaoli
Throwing and manipulating and cheating with a DNA nano-dice
title Throwing and manipulating and cheating with a DNA nano-dice
title_full Throwing and manipulating and cheating with a DNA nano-dice
title_fullStr Throwing and manipulating and cheating with a DNA nano-dice
title_full_unstemmed Throwing and manipulating and cheating with a DNA nano-dice
title_short Throwing and manipulating and cheating with a DNA nano-dice
title_sort throwing and manipulating and cheating with a dna nano-dice
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10147716/
https://www.ncbi.nlm.nih.gov/pubmed/37117228
http://dx.doi.org/10.1038/s41467-023-38164-7
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