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Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography
BACKGROUND: The progression of Alzheimer’s dementia (AD) can be classified into three stages: cognitive unimpairment (CU), mild cognitive impairment (MCI), and AD. The purpose of this study was to implement a machine learning (ML) framework for AD stage classification using the standard uptake value...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10149022/ https://www.ncbi.nlm.nih.gov/pubmed/37120537 http://dx.doi.org/10.1186/s12938-023-01107-w |
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author | Park, Sang Won Yeo, Na Young Lee, Jinsu Lee, Suk-Hee Byun, Junghyun Park, Dong Young Yum, Sujin Kim, Jung-Kyeom Byeon, Gihwan Kim, Yeshin Jang, Jae-Won |
author_facet | Park, Sang Won Yeo, Na Young Lee, Jinsu Lee, Suk-Hee Byun, Junghyun Park, Dong Young Yum, Sujin Kim, Jung-Kyeom Byeon, Gihwan Kim, Yeshin Jang, Jae-Won |
author_sort | Park, Sang Won |
collection | PubMed |
description | BACKGROUND: The progression of Alzheimer’s dementia (AD) can be classified into three stages: cognitive unimpairment (CU), mild cognitive impairment (MCI), and AD. The purpose of this study was to implement a machine learning (ML) framework for AD stage classification using the standard uptake value ratio (SUVR) extracted from (18)F-flortaucipir positron emission tomography (PET) images. We demonstrate the utility of tau SUVR for AD stage classification. We used clinical variables (age, sex, education, mini-mental state examination scores) and SUVR extracted from PET images scanned at baseline. Four types of ML frameworks, such as logistic regression, support vector machine (SVM), extreme gradient boosting, and multilayer perceptron (MLP), were used and explained by Shapley Additive Explanations (SHAP) to classify the AD stage. RESULTS: Of a total of 199 participants, 74, 69, and 56 patients were in the CU, MCI, and AD groups, respectively; their mean age was 71.5 years, and 106 (53.3%) were men. In the classification between CU and AD, the effect of clinical and tau SUVR was high in all classification tasks and all models had a mean area under the receiver operating characteristic curve (AUC) > 0.96. In the classification between MCI and AD, the independent effect of tau SUVR in SVM had an AUC of 0.88 (p < 0.05), which was the highest compared to other models. In the classification between MCI and CU, the AUC of each classification model was higher with tau SUVR variables than with clinical variables independently, which yielded an AUC of 0.75(p < 0.05) in MLP, which was the highest. As an explanation by SHAP for the classification between MCI and CU, and AD and CU, the amygdala and entorhinal cortex greatly affected the classification results. In the classification between MCI and AD, the para-hippocampal and temporal cortex affected model performance. Especially entorhinal cortex and amygdala showed a higher effect on model performance than all clinical variables in the classification between MCI and CU. CONCLUSIONS: The independent effect of tau deposition indicates that it is an effective biomarker in classifying CU and MCI into clinical stages using MLP. It is also very effective in classifying AD stages using SVM with clinical information that can be easily obtained at clinical screening. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12938-023-01107-w. |
format | Online Article Text |
id | pubmed-10149022 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-101490222023-05-01 Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography Park, Sang Won Yeo, Na Young Lee, Jinsu Lee, Suk-Hee Byun, Junghyun Park, Dong Young Yum, Sujin Kim, Jung-Kyeom Byeon, Gihwan Kim, Yeshin Jang, Jae-Won Biomed Eng Online Research BACKGROUND: The progression of Alzheimer’s dementia (AD) can be classified into three stages: cognitive unimpairment (CU), mild cognitive impairment (MCI), and AD. The purpose of this study was to implement a machine learning (ML) framework for AD stage classification using the standard uptake value ratio (SUVR) extracted from (18)F-flortaucipir positron emission tomography (PET) images. We demonstrate the utility of tau SUVR for AD stage classification. We used clinical variables (age, sex, education, mini-mental state examination scores) and SUVR extracted from PET images scanned at baseline. Four types of ML frameworks, such as logistic regression, support vector machine (SVM), extreme gradient boosting, and multilayer perceptron (MLP), were used and explained by Shapley Additive Explanations (SHAP) to classify the AD stage. RESULTS: Of a total of 199 participants, 74, 69, and 56 patients were in the CU, MCI, and AD groups, respectively; their mean age was 71.5 years, and 106 (53.3%) were men. In the classification between CU and AD, the effect of clinical and tau SUVR was high in all classification tasks and all models had a mean area under the receiver operating characteristic curve (AUC) > 0.96. In the classification between MCI and AD, the independent effect of tau SUVR in SVM had an AUC of 0.88 (p < 0.05), which was the highest compared to other models. In the classification between MCI and CU, the AUC of each classification model was higher with tau SUVR variables than with clinical variables independently, which yielded an AUC of 0.75(p < 0.05) in MLP, which was the highest. As an explanation by SHAP for the classification between MCI and CU, and AD and CU, the amygdala and entorhinal cortex greatly affected the classification results. In the classification between MCI and AD, the para-hippocampal and temporal cortex affected model performance. Especially entorhinal cortex and amygdala showed a higher effect on model performance than all clinical variables in the classification between MCI and CU. CONCLUSIONS: The independent effect of tau deposition indicates that it is an effective biomarker in classifying CU and MCI into clinical stages using MLP. It is also very effective in classifying AD stages using SVM with clinical information that can be easily obtained at clinical screening. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12938-023-01107-w. BioMed Central 2023-04-29 /pmc/articles/PMC10149022/ /pubmed/37120537 http://dx.doi.org/10.1186/s12938-023-01107-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Park, Sang Won Yeo, Na Young Lee, Jinsu Lee, Suk-Hee Byun, Junghyun Park, Dong Young Yum, Sujin Kim, Jung-Kyeom Byeon, Gihwan Kim, Yeshin Jang, Jae-Won Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography |
title | Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography |
title_full | Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography |
title_fullStr | Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography |
title_full_unstemmed | Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography |
title_short | Machine learning application for classification of Alzheimer's disease stages using (18)F-flortaucipir positron emission tomography |
title_sort | machine learning application for classification of alzheimer's disease stages using (18)f-flortaucipir positron emission tomography |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10149022/ https://www.ncbi.nlm.nih.gov/pubmed/37120537 http://dx.doi.org/10.1186/s12938-023-01107-w |
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