Cargando…
16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk
BACKGROUND: Eighty-three strains of Leuconostoc mesenteroides were isolated from Algerian raw camel milk. Based on morphological, biochemical, and physiological characters tests, strains were identified as Ln. mesenteroides subsp. mesenteroides. Seven strains had a remarkable antagonistic and probio...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151297/ https://www.ncbi.nlm.nih.gov/pubmed/37126186 http://dx.doi.org/10.1186/s43141-023-00500-1 |
_version_ | 1785035509858304000 |
---|---|
author | Chentouf, Hanane Fatma Rahli, Fouzia Benmechernene, Zineb Barros-Velazquez, Jorge |
author_facet | Chentouf, Hanane Fatma Rahli, Fouzia Benmechernene, Zineb Barros-Velazquez, Jorge |
author_sort | Chentouf, Hanane Fatma |
collection | PubMed |
description | BACKGROUND: Eighty-three strains of Leuconostoc mesenteroides were isolated from Algerian raw camel milk. Based on morphological, biochemical, and physiological characters tests, strains were identified as Ln. mesenteroides subsp. mesenteroides. Seven strains had a remarkable antagonistic and probiotic characterization. The present study aims at identifying these strains by means of 16 s rRNA gene sequencing and Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), extending phenotypic and genotypic studies done previously. RESULTS: The phyloproteomic dendrograms of the studied strains based on MALDI-TOF MS provided the same identification with more intraspecific information from the 16S rRNA gene sequencing based on phylogenetic analysis. The latter were in agreement with the previous biochemical/physiological identification, the seven isolated strains were Ln. mesenteroides subsp. mesenteroides. CONCLUSIONS: Remarkably, MALDI-TOF MS fingerprinting was found to be effective enough as 16S rRNA gene sequencing identification, allowing faster and more reliable analysis than biochemical/physiological methods. |
format | Online Article Text |
id | pubmed-10151297 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-101512972023-05-03 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk Chentouf, Hanane Fatma Rahli, Fouzia Benmechernene, Zineb Barros-Velazquez, Jorge J Genet Eng Biotechnol Research BACKGROUND: Eighty-three strains of Leuconostoc mesenteroides were isolated from Algerian raw camel milk. Based on morphological, biochemical, and physiological characters tests, strains were identified as Ln. mesenteroides subsp. mesenteroides. Seven strains had a remarkable antagonistic and probiotic characterization. The present study aims at identifying these strains by means of 16 s rRNA gene sequencing and Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), extending phenotypic and genotypic studies done previously. RESULTS: The phyloproteomic dendrograms of the studied strains based on MALDI-TOF MS provided the same identification with more intraspecific information from the 16S rRNA gene sequencing based on phylogenetic analysis. The latter were in agreement with the previous biochemical/physiological identification, the seven isolated strains were Ln. mesenteroides subsp. mesenteroides. CONCLUSIONS: Remarkably, MALDI-TOF MS fingerprinting was found to be effective enough as 16S rRNA gene sequencing identification, allowing faster and more reliable analysis than biochemical/physiological methods. Springer Berlin Heidelberg 2023-05-01 /pmc/articles/PMC10151297/ /pubmed/37126186 http://dx.doi.org/10.1186/s43141-023-00500-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Chentouf, Hanane Fatma Rahli, Fouzia Benmechernene, Zineb Barros-Velazquez, Jorge 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk |
title | 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk |
title_full | 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk |
title_fullStr | 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk |
title_full_unstemmed | 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk |
title_short | 16S rRNA gene sequencing and MALDI TOF mass spectroscopy identification of Leuconostoc mesenteroides isolated from Algerian raw camel milk |
title_sort | 16s rrna gene sequencing and maldi tof mass spectroscopy identification of leuconostoc mesenteroides isolated from algerian raw camel milk |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151297/ https://www.ncbi.nlm.nih.gov/pubmed/37126186 http://dx.doi.org/10.1186/s43141-023-00500-1 |
work_keys_str_mv | AT chentoufhananefatma 16srrnagenesequencingandmalditofmassspectroscopyidentificationofleuconostocmesenteroidesisolatedfromalgerianrawcamelmilk AT rahlifouzia 16srrnagenesequencingandmalditofmassspectroscopyidentificationofleuconostocmesenteroidesisolatedfromalgerianrawcamelmilk AT benmechernenezineb 16srrnagenesequencingandmalditofmassspectroscopyidentificationofleuconostocmesenteroidesisolatedfromalgerianrawcamelmilk AT barrosvelazquezjorge 16srrnagenesequencingandmalditofmassspectroscopyidentificationofleuconostocmesenteroidesisolatedfromalgerianrawcamelmilk |